FMO04493.5prime Sequence
1185 bp (1014 high quality bases) assembled on 2008-07-30
> FMO04493.5prime
CGTATAGCATACATTATACCAAGTTATCAGTCGACATGAGCCACGGCGAC
CAGAGTCAAAACCAGAGCAGCCAGCGGAGCCAGGCGCTCACTGGCGGTGG
TGACTCCCCGAGGGACAGGGAGAAGGAAAAGAAGGGCTGGTTCCACTCGC
TGACCAGGCGCAAGAAGTCCGACTCGGCGCTGGCCGTGACTGCATCCGCC
GCCGTCTCCACCAGTGGATCGCAGAACAACAACAACGAAGTGTGCGTCCT
TGAGGCAGCGGACTCTTCCATGGCCAGCTGCAGCAATGGGGGCACGGGCA
CAGGAACTCTGCGCAGAAGGCGGGACAAGGACAAGCGAAACGTGTTTGCC
AGACTACGAAGGAAGGTGGGCCAAGGGCTCAGCTCCCTGCGAAACTGGCA
CTCCATGGGCGACTGCGACGACGGCGGAACTACTGATGCCACCTACGAGT
TCCTTACGCCGGCCATCTGTCCGGAACCCACGCTACCATTCACACACGAC
TACTTGCGCTTTATCCGGAAGAAATGGCTTGAGCGCGAGGACGCCCACTC
GCCCAACCAGATCATGTACAAGGCCTGCTCCGAGATGCTCAACCAAGTGT
GGTACTGGGGTGAGATCTCCAGGCGCGATTCGCAGCGGCAGTTGAGTGAC
AAGCCGACTGGGTCGTTTCTAGTCCGCGACTCGGAAACCAGCGGATCCCA
ATTCACGCTCAGCTTTCGGATTGTGAACGTAACCCTGCATTATCGACTGG
AATATCGCGACAATTTTTGGCACTTCGAGGAACTTAAGTACGAGTCCATT
GTCGAGATGATCGAAGATATCTTGCACCGCTGCACCAACGACAACTTTGT
GTGCTTTGTGAAGGTTCCCAACGAGATGCAGCCACCGTTTCCAGTGATCC
TCAAGTACCCGTTGAGCCGGTACTCCAACATGCCCAAGCTGCAGGACTTA
TGCCGCCGTGTTTCTGCAGCGCCAGATTGTCTCGCGAAACAGCTGGCCCA
GTTGCCAGTGCCCGGCGCAGATGCTGAGTACTTGTTCGGTGGAACGGGAG
CTTGTCTTCAAGATGCAAGCTTTTCTAGACCATTCCGTTTGGGCGCGCGG
GTCCAGTTATGGTCAAATCCATAAATCATATCATAATCCATAATCCAACC
TAGCCTAGAAATCTGGTCATGAACTAGGTCTTGGA
FMO04493.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:35:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Socs44A-RA | 1840 | CG2160-RA | 131..1154 | 36..1063 | 4950 | 99.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:35:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 8127705..8128261 | 36..592 | 2785 | 100 | Plus |
| 2R | 25286936 | 2R | 8128324..8128790 | 593..1063 | 2015 | 98.1 | Plus |
Blast to na_te.dros performed on 2014-11-28 21:35:42 has no hits.
FMO04493.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:38:26 Download gff for
FMO04493.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Socs44A-RA | 122..1159 | 28..1069 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2010-07-30 09:28:54 Download gff for
FMO04493.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Socs44A-RA | 66..1103 | 28..1069 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:27:21 Download gff for
FMO04493.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Socs44A-RA | 122..1159 | 28..1069 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:27:21 Download gff for
FMO04493.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 8127696..8128261 | 28..592 | 99 | -> | Plus |
| 2R | 8128324..8128765 | 593..1038 | 98 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:38:26 Download gff for
FMO04493.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 4015201..4015766 | 28..592 | 99 | -> | Plus |
| arm_2R | 4015829..4016270 | 593..1038 | 98 | -> | Plus |
