FMO04494.5prime Sequence
521 bp (521 high quality bases) assembled on 2008-07-30
> FMO04494.5prime
AGTTATCAATCGACATGTTCAATATTAAATTGCTGCTTTTGTTATTGGCC
GTTTCGTGGTTCCACCATGGACAAGCCGTCCAGGAGACGAAAATCGAAGA
AAAACCAGTATCAGAGCCTGAAATTGAATCCGAAATAAAGAACTCTACGA
GCGTCCCAAGTAAATGCAATATTTACTATAGGAACTACCAATGGGCTCTT
CAGGATTGTGTCTGCCGTTGTTTCCAAAACGAATGCCTTATGCAAATCGA
GAGCGACCAGCGCAAAAAGGAGGGTAGATCCCCATTTGTGCCCGTTACGG
AGGAACTCTGCCGTTCCTTCATCTGCAAAAAGTGCAGCGTGGGTTTCCCC
GTGGTTGCTGAATTCCCCATTCCGGCTCCCTGTGGATGCAATCGAAAGCC
AGGATCGATTGCCACAGAGAGATTCTACAGTTTGTGCCACCTGCTGAAAT
TCTCAGCGGAGAACAGCAAACCATTCCTGACTTATTCCTATTGTTGGCCC
TTCGCAAGCTTTCTAGACCAT
FMO04494.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:06:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Sgs5-RA | 636 | CG7596-RA | 27..519 | 11..503 | 2465 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:06:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 17595388..17595659 | 11..282 | 1360 | 100 | Plus |
| 3R | 32079331 | 3R | 17595716..17595904 | 283..471 | 945 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:06:56 has no hits.
FMO04494.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:51:38 Download gff for
FMO04494.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sgs5-RA | 22..523 | 3..508 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-30 14:48:54 Download gff for
FMO04494.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sgs5-RA | 1..495 | 13..508 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:50:07 Download gff for
FMO04494.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sgs5-RA | 22..523 | 3..508 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:50:07 Download gff for
FMO04494.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 17595383..17595659 | 3..282 | 98 | -> | Plus |
| 3R | 17595716..17595904 | 283..471 | 100 | -> | Plus |
| 3R | 17595964..17595999 | 472..508 | 94 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:51:38 Download gff for
FMO04494.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 13421105..13421381 | 3..282 | 98 | -> | Plus |
| arm_3R | 13421438..13421626 | 283..471 | 100 | -> | Plus |
| arm_3R | 13421686..13421721 | 472..508 | 94 | | Plus |
