FMO04495.5prime Sequence
835 bp (835 high quality bases) assembled on 2008-07-30
> FMO04495.5prime
AGCATACATTAAACGAAGTTATCAGTCGACATGAAGGTGCTAGCGGTCCT
ACTTTTGGGGGTGATTGCCTCCGCCACGGCGTTCGAGAAGCCGGTTTTCT
GGAAGGATGTGCCCGTGGGCAAGGCCTCGATCGAAGGTAGGATCACCATG
GGATATCCTGCCTACGAAGGCAAGGTGCCCTACATTGTCGGTTTGGGCTT
CAGCAAGAACGGTGGAGGCACCTGGTGCGGCGGTTCCATTATCGGCAACA
CCTGGGTGATGACCGCCAAGCATTGTACCGATGGCATGGAATCGGTGACC
ATCTACTACGGAGCCCTCTGGCGCCTGCAGGCACAGTACACCCACTGGGT
GGGACGTAGCGACTTCATTGAGCACGGATCTGGAGACATCTCCCTCATTC
GCACTCCCCACGTAGACTTCTGGTCGCTGGTCAACAAGGTGGAGCTCCCC
AGGTACGACGATCGCTACAACAACTACCAAGGCTGGTGGGCTCTGGTCTC
CGGATGGGGCAAGACCTCCGATGAGGGCGGTGTCTCCGAGTACCTGAACT
GCGTCGATGTCCAGATTGGCGAAAACTCCGTGTGCGAGAACTACTACGGC
AGCTTCTCCGGCGACCTAATCTGCATCCCCACTCCCGAGAACAAGGGCAC
CTGCAGCGGCGACTCCGGTGGCCCACTGGTCATCCACGACGGCAACCGCC
AGGTGGGCATTGTGTCCTTCGGCTCCTCCGCCGGCTGCCTCTCCAACGGT
CCCAAGGGTATGGTGCGCGTCACCAGCTACCTGGACTGGATCCGCGACAA
CACTGGCATCTCTTATGCAAGCTTTCTTAGACCAT
FMO04495.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:39:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Jon65Ai-RB | 951 | CG10475-RB | 26..813 | 29..816 | 3940 | 100 | Plus |
| Jon65Ai-RA | 860 | CG10475-RA | 26..813 | 29..816 | 3940 | 100 | Plus |
| Jon65Aii-RA | 833 | CG6580-RA | 369..805 | 385..815 | 785 | 79.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:39:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 6053631..6054418 | 816..29 | 3940 | 100 | Minus |
| 3L | 28110227 | 3L | 6052751..6053187 | 385..815 | 755 | 78.7 | Plus |
| 3L | 28110227 | 3L | 8391807..8392021 | 295..509 | 385 | 78.6 | Plus |
| 2L | 23513712 | 2L | 4952785..4953004 | 345..126 | 350 | 77.3 | Minus |
| 2R | 25286936 | 2R | 8691844..8692188 | 385..723 | 340 | 73.9 | Plus |
| 3L | 28110227 | 3L | 8393171..8393378 | 509..302 | 290 | 76 | Minus |
| 2L | 23513712 | 2L | 4950300..4950403 | 491..388 | 235 | 81.7 | Minus |
| 2L | 23513712 | 2L | 4952555..4952724 | 554..385 | 235 | 75.9 | Minus |
| 2L | 23513712 | 2L | 4952291..4952337 | 812..766 | 220 | 97.9 | Minus |
| 2L | 23513712 | 2L | 4954670..4954757 | 472..385 | 215 | 83 | Minus |
Blast to na_te.dros performed on 2014-11-28 18:39:14 has no hits.
FMO04495.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:15:42 Download gff for
FMO04495.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Jon65Ai-RA | 22..816 | 24..820 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-30 14:45:56 Download gff for
FMO04495.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Jon65Ai-RA | 5..799 | 24..820 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:31:48 Download gff for
FMO04495.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Jon65Ai-RA | 22..816 | 24..820 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:31:48 Download gff for
FMO04495.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 6053627..6054422 | 24..820 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:15:42 Download gff for
FMO04495.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 6046727..6047522 | 24..820 | 99 | | Minus |
