FMO04501.5prime Sequence
734 bp (734 high quality bases) assembled on 2008-08-04
> FMO04501.5prime
CTTCGTATAGCATACATAATACGAAGTTATCAGTCGACATGTCGGCGGTG
GCCTACGACTCACTGCTGTCAACGACGGCGGTGATCAGCACCGTCTTCCA
GTTCCTCTCCGGCGCCATGATATGCCGAAAGTACATCCAGAAGAAAAGCA
CGGGGGACTCTTCCGGAGTTCCCTTCATATGCGGATTCTTATCGTGCAGC
TTTTGGTTGCGCTACGGTGTCTTAACCAACGAGCAGAGCATTGTGCTGGT
CAACATCATCGGATCGACGCTCTTTCTGGTCTACACGCTGATCTACTATG
TGTTTACCGTCAACAAACGTGCCTGTGTAAAGCAGTTTGGGTTTGTTCTG
ACTGTTCTGGTGGTGGTCATTGTCTACACCAATCGGCTGGAAGATCAGCG
CGATCGAATGATACACGTCACAGGAATTGTGTGCTGCATCGTGACCGTGT
GTTTCTTCGCCGCCCCGCTGGCTAGCTTGCTGCATGTGATACGGGCGAAG
AACTCCGAGAGCCTTCCCCTGCCTCTGATAGCCACGTCCTTCGTGGTCAG
CCTGCAGTGGCTTATCTACGGTATACTGATATCGGACTCATTTATCCAGA
TTCCCAACTTTCTGGGCTGCATACTGTCGCTGCTGCAGTTGGGTCTGTTC
GTCCTCTACCCGCCGCGAAGCTACTCCGGCCACGGCTACAAGCTGGTCGA
ACAGGCAGTGCCGTTTGCAAGCTTTCTAGACCAT
FMO04501.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:11:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| slv-RC | 1247 | CG8717-RC | 286..963 | 39..716 | 3390 | 100 | Plus |
| slv-RB | 1381 | CG8717-RB | 420..1097 | 39..716 | 3390 | 100 | Plus |
| slv-RA | 1091 | CG8717-RA | 130..807 | 39..716 | 3390 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:11:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 8081273..8081503 | 424..194 | 1155 | 100 | Minus |
| 2R | 25286936 | 2R | 8081031..8081209 | 599..421 | 895 | 100 | Minus |
| 2R | 25286936 | 2R | 8080843..8080962 | 716..597 | 600 | 100 | Minus |
| 2R | 25286936 | 2R | 8081860..8081939 | 195..116 | 400 | 100 | Minus |
| 2R | 25286936 | 2R | 8082015..8082091 | 115..39 | 385 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:11:11 has no hits.
FMO04501.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:29:31 Download gff for
FMO04501.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| slv-RA | 125..812 | 34..722 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-04 10:57:52 Download gff for
FMO04501.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| slv-RA | 275..962 | 34..722 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:51:50 Download gff for
FMO04501.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| slv-RA | 125..812 | 34..722 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:51:50 Download gff for
FMO04501.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 8080838..8080959 | 600..722 | 97 | <- | Minus |
| 2R | 8081031..8081206 | 424..599 | 100 | <- | Minus |
| 2R | 8081274..8081503 | 194..423 | 100 | <- | Minus |
| 2R | 8081862..8081939 | 116..193 | 100 | <- | Minus |
| 2R | 8082015..8082096 | 34..115 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:29:31 Download gff for
FMO04501.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 3968343..3968464 | 600..722 | 97 | <- | Minus |
| arm_2R | 3968536..3968711 | 424..599 | 100 | <- | Minus |
| arm_2R | 3968779..3969008 | 194..423 | 100 | <- | Minus |
| arm_2R | 3969367..3969444 | 116..193 | 100 | <- | Minus |
| arm_2R | 3969520..3969601 | 34..115 | 97 | | Minus |
