FMO04502.5prime Sequence
1257 bp (960 high quality bases) assembled on 2008-08-04
> FMO04502.5prime
GTATAGCATACATTATACGAAGTTATCAGTCGACATGCCCGATCTGAAGT
ATATGTTGACGATTCTAAGCCTGTATTTCTTTGTAGGAAGTGTTCAAGCG
AATTGCTTAATCGACTTGGCTCATTTGAATGCCAATTATGTGTACTTAAG
CCAAAATAACGGAGTCTATGATATTCAGCGCAGTGATATTGTGGAAATCC
ACCAGACGTTGTATCTGCTGTGCAATGGAGGACTTCATCGCACCACATTC
CTGTGTCGATATGACAGTGTTTTCAGTCCAGCGCTAAGCTCAGCAGCATG
TGCACCACCCGATCCTGTCGTGGTAAAAGTACCAGATACATCTTGTTCCA
TTCCGAGTGCTACGTTCGCCGTAGGATTTTCCTTCAATGGACGCTTTATG
GAACTGTATCGCAATTGTTTTGATGGCTACAGCTTGGCGTTTCAACATTC
CATCTACAAGGCTTATCGCTACGTAAACACCGTTCCACGTCCCAATCCCA
CTTGGCAGTCGGATCAATTAAGTGGTGGATTTGACAATGCCTACGAGGGA
AGAGCAACACAAGCTTGTTTGCTCACTAACCTGGGCGCAGTACAGCCGCA
GTGTAAATTTGATCGTGGCCACATGACACCGGCTTCTGCATTTATATCCA
CAGAGCTGAAGAAGTCAACGTTCAGGTATCTAAACGCTATCCCCCAATAT
CGAGGAGTTAATCGTGGCAAATGGAAGGCCGTTGAGACCTGGGTGAACAA
TATGGTTAGGGGACTGTATGATAATCCAATCATCAATAATGTACAAATAC
CGCGTACTTACGATGTCCTTAAGGTTTTGCATTGGGGCATTGGGAGTGCA
TAGACTAAGACATAATACCAAATAACAATATGATACCAATTTACCTGTTG
GAAAATAACAAAATTCCCGTGCCAGAGTGGATGTACAATATAGTTAGTCA
TTCTCTCCGGAGATAAATGGGTAATGCTGACCTTACAACGACGTAAGTCT
ACCCAATCAGCAGGCATTAACCCAGATCTGCCATGTGATTCCCGGTCATC
CGGGTCTTAACCATATACGAAGGACGTTGGACAACACTGTCTTGCTGGCG
ATTCGTAACGTTTTATATAACATAAAACGCCTCCAAACTTTAACTGTGAT
TGTCCCAACCTTTTTCTAGAAACCATTTCGTTGGCCGCGTTCCAGGTTAT
GGTACTTATACTTAATCTATTAATCAATAAATCTCATATTCACACAACAC
ATGATGC
FMO04502.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:16:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9989-RA | 1214 | CG9989-RA | 35..1136 | 35..1146 | 5100 | 97.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:16:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 28671287..28671887 | 480..1083 | 2670 | 98 | Plus |
| 3R | 32079331 | 3R | 28670838..28671236 | 81..479 | 1995 | 100 | Plus |
| 3R | 32079331 | 3R | 28670738..28670783 | 35..80 | 230 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:16:10 has no hits.
FMO04502.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:30:08 Download gff for
FMO04502.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9989-RA | 29..1131 | 29..1140 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-04 10:57:54 Download gff for
FMO04502.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9989-RA | 1..1099 | 33..1140 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:56:59 Download gff for
FMO04502.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9989-RA | 29..1131 | 29..1140 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:56:59 Download gff for
FMO04502.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 28670732..28670783 | 29..80 | 94 | -> | Plus |
| 3R | 28670838..28671236 | 81..479 | 100 | -> | Plus |
| 3R | 28671287..28671887 | 480..1083 | 98 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:30:08 Download gff for
FMO04502.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 24496454..24496505 | 29..80 | 94 | -> | Plus |
| arm_3R | 24496560..24496958 | 81..479 | 100 | -> | Plus |
| arm_3R | 24497009..24497609 | 480..1083 | 98 | == | Plus |
