FMO04505.5prime Sequence
1021 bp (1010 high quality bases) assembled on 2008-08-04
> FMO04505.5prime
TTCGTATAGCATACATTATACGAAGTTATCAGTCGACATGGCGAACGTTA
ATTTGCAGATGCCGCTGATTGCAGCAGCCACCACCATACTGACAATTGTC
AGTGGGGCCACCGCCAGCACCACATCCTCGACAGAGACGGCCAAGAACCA
GCCATTGTATCACAATATGGGGTCTTTGTTCGAGAATCGATGGCTGCCAA
TGGATCAGCCGATGCAGCATCATCCCAATCATCGGTATGGCTCGTCCAAA
ATTCCACGGGCAAATGCGGGTGAAAGGAGGGCCTTTAGCAGCGGCCATTC
CTCAGGCTCCCGGCAAGGATTGGCCCATATGCTCAACGGACTAACAAATC
TCTCGGGCCTGGGACACATTTCCAATGGGTATGGCTCGGTGGCGCCCACC
CATACGGAGGCACTGGCCCTGGGCTCCACCAAACAGGAGATACCGATTTA
CGAGGACCACAATGAAGATGCCTCCGCGGTGGCTGCCGTTGCAGCAGCTG
GAGCCCATGATTTTGGCTCGGGAAATGAACAATCTGGCGGTGGATTGGAG
AACAATCAAGAACATTCGCCGATTTACAATTATCCCGGTGCCGCACATAA
TGGTGGATTTTTGCCAGCCTACGGTTCAGCTGGATCTGGTCACGAGCAGG
ACTACGCACAGTGGTCATCATCGGCGCCGGAGGAGCAGCAGCCGGAACAG
CAGGCGGCTCATCCCTATGCGTACGATAAAATTTTCAATGGGAAATTTCC
TGCCGCCGTACATGCAGGACTCTGGATACGATGACCAGCAGGGCAGCTTT
ACCACCAGCAGTTGCAACAACCAACAACAGCAGCAACAGCAACAGCATCT
GCAGCAGCTGCAGCAGCAACAGCAGCTACTGTACCACAACAGCAGCAGCA
GCAGCAGCAGCGCCAGAACAGGAACAACACTCTTCGTATTTCGGCCACAT
GAACCATCCAATTCTGGAATCCGCTGCATCATCCGCTTCATCTGCCTCGA
ACGGAATCTGGTGCTGATGAC
FMO04505.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:06:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7031-RB | 2597 | CG7031-RB | 66..1049 | 38..1021 | 4650 | 98.6 | Plus |
| CG7031-RA | 1796 | CG7031-RA | 66..1049 | 38..1021 | 4650 | 98.6 | Plus |
| CG7031-RC | 2594 | CG7031-RC | 66..1046 | 38..1021 | 4595 | 98.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:06:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 22804776..22805742 | 55..1021 | 4365 | 98.6 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:06:26 has no hits.
FMO04505.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:39:10 Download gff for
FMO04505.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7031-RA | 66..1049 | 38..1021 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-04 10:59:22 Download gff for
FMO04505.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7031-RA | 66..1049 | 38..1021 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:59:09 Download gff for
FMO04505.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7031-RA | 66..1049 | 38..1021 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:59:09 Download gff for
FMO04505.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 22804356..22804373 | 38..55 | 100 | -> | Plus |
| 3R | 22804777..22805742 | 56..1021 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:39:10 Download gff for
FMO04505.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 18630078..18630095 | 38..55 | 100 | -> | Plus |
| arm_3R | 18630499..18631464 | 56..1021 | 98 | | Plus |
