FMO04507.5prime Sequence
1142 bp (707 high quality bases) assembled on 2008-08-04
> FMO04507.5prime
TTCGTATAGCATACATTATACGAAGTTATCAATCCACATGTCGCAAACTG
CCAACTGGGTTCTGCCGCTTTTGCTGTGGCTTCTCTGCATGGGATTCCCC
ATTCTGCATGGCGCCGATCTCTGCCAGCCCATCGGATGGCGGAACTTCCA
GTGCAGCGAGGTCGCTTCTCTGCAGGATCTGGTGGACTTGGGCGCCGAAA
ACTGGCACACGCTCGCCATACGGAATGTGCAAACGGAACTGGAGGTGGGA
TCAGGCGAAAATGCCAATCACTTGGCCAACTTGCTAGACTTGGATCTGAC
TGGCGCGGCTCCAATAAATGTGCATACCAACGGATTTTCCATTCTGCCCA
ATCTGCGGCAACTGAATCTCAGTGGCTGCGGTCTCGTTGACATCCGGGGA
AATCACTTTGCGCCTGAGTCAGCGCTCCAGCGGATCGATTTTAGTCACAA
TCAAATGGAGCTTCTGGATCGCGACTTTTTTGGCAATCTAAGGAAATTGA
TCTATGCGAATTTTTCGCACAATGCTCTAAAGCAATGCGATCTGCCGCAC
ATGCCACTGCTAAAATCGACTGGAATTGGGGCACAATCGATTGGTGAATG
CCACCTTCGGAGTTTGTCCACAGCTGCAGGAGTTGATTTTGAATGACAAT
CAACTGATACAGTTGGACGTGAATGCCTTTCGTGGACTCCATGGTCTGTT
GGAGCTGCAGCTAGCGGGAATAGATTGAGCTCCATTGGCCTGGAAACCTT
TCACCGCTCGCCCAGCTGCGAAAGTTGAACCTTTTCCCAAAACGCCCTCG
ATGCACTGCGTCCAAATGTGTTTGGAGCGGTTCAAACTTTGTGTTGCATC
TACAGCAGCTGGATTTGTCCGGCATCGCATCCGCCTGCTGTTCGACACCA
GTTCAAAGTGTTGGCCAGACTGCAATGCTGGATGTGTCCAGAACACATCT
CAGCCTCATTCCTGCTCACCTTGTGGGCTTGGGCCTCACCATCGGAAGCT
GTATTCGGAGGACCATGCTTATATGGAAATCAACCCGGTCACCCTTGCGT
CCTGCTGACCCAGGAATCTGGAATCGTGCAACAATACTTGGAAATTCATG
GAGAGAAACGAATCTTGCCGGAGTACTCCCTCTGCCGGCCAT
FMO04507.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:25:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6749-RA | 1834 | CG6749-RA | 6..1039 | 38..1065 | 4525 | 96.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:25:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 9732938..9733346 | 662..253 | 1985 | 99.5 | Minus |
| 3L | 28110227 | 3L | 9732051..9732444 | 1048..661 | 1130 | 92.7 | Minus |
| 3L | 28110227 | 3L | 9733585..9733802 | 255..38 | 1075 | 99.5 | Minus |
Blast to na_te.dros performed on 2014-11-28 23:25:37 has no hits.
FMO04507.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:22:59 Download gff for
FMO04507.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6749-RA | 1..986 | 35..1013 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-04 11:01:03 Download gff for
FMO04507.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6749-RA | 1..986 | 35..1013 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:11:33 Download gff for
FMO04507.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6749-RA | 1..986 | 35..1013 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:11:33 Download gff for
FMO04507.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 9732099..9732442 | 663..1000 | 95 | <- | Minus |
| 3L | 9732938..9733344 | 255..662 | 99 | <- | Minus |
| 3L | 9733586..9733802 | 38..254 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:22:59 Download gff for
FMO04507.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 9725199..9725542 | 663..1000 | 95 | <- | Minus |
| arm_3L | 9726038..9726444 | 255..662 | 99 | <- | Minus |
| arm_3L | 9726686..9726902 | 38..254 | 99 | | Minus |
