FMO04509.5prime Sequence
802 bp (802 high quality bases) assembled on 2008-08-04
> FMO04509.5prime
ACTTCGTATAGCATACATTATACGAAGTTATCAGTCGACATGAAGTTGCT
GCAAACAATTCGAAGGATGAGCCAAGGTGCCTCGGAGGTGCCACTTTCGG
CACTTCGTCTGAAGTACTGTGAGCGCAAGGACGCCTTCCTGGAGGATAAC
ATCAAGGTGAAGAATCCCTTCTGTGTATTCCGAGACTGGCTGGAGTTGGC
GCTGAAAACCCCGGAGATCTTGGAGCCCAATGCCGCCGCCCTGGCTACCG
TGAGTGCGGAGGGTAGGCCTTCCAATCGCTATGTGCTGGTTAAAGAAGCC
ACCGCCGAGGGATTCACCTTCTTCACGAACTACGGTAGCCGCAAGGCTGA
GGACATCAAGTCCAATCCCTATGTAGCCATATCCTTCTACTGGCTCCCTT
TGCGGCGAAGTGTCCGCATCGAGGGCGTGGCTGAGAAGATCTCGGTGGAA
GACTCCCTCAAGTACTTCCACCAGCGACCAAGAGCCAGCCAAATCGGAGC
CGCTGCCAGTCCGCAGAGCCAGCGGATTCCGTCGCGCAGCTACTTGGACG
ACGTGGAGGCGGCAATTAAGCTAGAACTGGGTCCCGATGGCGAGGTGCCG
CTGCCCAACTGGGGTGGCTACTTGGTGCGTCCCGACCTCATTGAGTTCTG
GCAGGGTCAGACCGATCGGCTCCACGATCGCATCCGCTTTAGACGAGGTG
GAGGAGTAGAATCCGAAGTCGACAGCAAACTGGTTCACAAAGGAGAGGAT
GGTTGGGTGTACGAACGGCTGGCTCCTGCAAGCTTTCTAGACCATTCGTT
TG
FMO04509.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:16:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| sgll-RA | 1253 | CG31472-RA | 137..874 | 40..777 | 3690 | 100 | Plus |
| sgll-RB | 1314 | CG31472-RB | 199..935 | 41..777 | 3685 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:16:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 7810856..7811533 | 100..777 | 3390 | 100 | Plus |
| 3R | 32079331 | 3R | 7810730..7810789 | 41..100 | 300 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:16:24 has no hits.
FMO04509.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:30:13 Download gff for
FMO04509.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31472-RA | 106..848 | 40..783 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-04 10:59:24 Download gff for
FMO04509.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31472-RB | 111..856 | 38..783 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:57:10 Download gff for
FMO04509.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sgll-RA | 137..879 | 40..783 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:57:10 Download gff for
FMO04509.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 7810726..7810789 | 38..100 | 98 | -> | Plus |
| 3R | 7810857..7811538 | 101..783 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:30:13 Download gff for
FMO04509.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 3636448..3636511 | 38..100 | 98 | -> | Plus |
| arm_3R | 3636579..3637260 | 101..783 | 99 | | Plus |
