FMO04510.5prime Sequence
1239 bp (1030 high quality bases) assembled on 2008-08-04
> FMO04510.5prime
CTTCGTATAGCATACATTATACGAAGTTATCAGTCGACATGCCGCGACGC
AACAAGAAATCAGCAGCAGGCAGAGGCCGCACCAATGACTCCAATTCTGA
GGACGAGTCCTTTGACAATGTGAGCGTTTACTCTCATATGTCCGAAGTCG
CATCCTCGGAGGCCACCGACGAGCTGGCCAATGAGCGTTTCGAGGAGAAG
TTCGAGAAGGCCCTGGAACAGGCCACCGAGAAGTCGGCCCAGACACGTGT
GCAGGCTCTGCAAGCGATTTGCGAACTGCTCATGCACCGCTACATGCCGG
ACTTCGTGGAGGACCGCAAGATGACCCTGATGGATTTCGTGGAGAAGAGC
ATCCGTCGAGGCAAGGGCCAGGAGCAGGTGTGGGGCGCACGACTCGCGCC
CCTGCTGGTGCTCCAAATGGGCGGGGATGAAGGCATATCCAAGGCGATGA
ATCAATTCCTGTTGAACACCGTTCAGGACAAGTCCGTGGGCTTCGATGCC
CGTGCCAAGTGCTGCACAGCTGTGGGATTGTTGAGCTTCCTGGGCTGCGA
GGATGTTGGGGAGTTGGTACACCTGATGCAGAGCTTCGAGGCCATCTTCG
CAGGCAGTTATTTGCGTGGCGATGACAAGACACCGGTATCCGTCACCGCC
GAAGCTGGGACTTTCCATGCGGAGGCCTTGAACGCCTGGGGGCTTCTACT
AACACTTATACCTTCGGGGGATTTTGTTTCGTTGATGACCACTGGCCAAA
ACATGTTTCCATCTATTAAGAAGTTCTTGGGTCTCTTGCATCTACACATT
TGGACGTCCGCATGGCCGCTGGCGAGACCATTGCTTTAATTCTGGAGTCG
GGACGTGCTCACGAAGAGGATTTCCTAGAAGATGACATCGCTGAGTTATC
GGAGGCCGTCAAGCAGCTGGCTACGGATTCCGCATAAGTACCGCGCCAAA
GCGCGATCGCTAGGCCCAAGCGTGCCACCTTTCCGTGATGTGCTGCGATA
CCCTGGAAGGAGAACATTTCCCCAGAAGATTAGCATTCGAATCCGTACCG
AATCCCTGAACCTAGAATCCCTGGTCCATCCATCATCAGTATTCGGGCCA
TGTTGCACTGTCATGGGTTCCGGAAATGAACCCTCGCAGCTGCAGGAAAA
CCGAGTTCATCTCGGTAAACTCTCCACTGAACTCGACCACGTAACATGGC
CTCATGGACATGCAAGGTCTAAGCCGACAACCAAGCCCT
FMO04510.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:52:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31694-RA | 2639 | CG31694-RA | 816..1927 | 37..1161 | 5055 | 97.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:52:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 2871004..2871690 | 760..74 | 3435 | 100 | Minus |
| 2L | 23513712 | 2L | 2870694..2870932 | 1002..761 | 935 | 97.1 | Minus |
| 2L | 23513712 | 2L | 2869441..2869552 | 1123..1008 | 230 | 87.9 | Minus |
| 2L | 23513712 | 2L | 2873635..2873674 | 76..37 | 200 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 21:52:43 has no hits.
FMO04510.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:48:10 Download gff for
FMO04510.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31694-RA | 811..1929 | 31..1164 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-04 11:02:39 Download gff for
FMO04510.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31694-RA | 840..1958 | 31..1164 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:35:47 Download gff for
FMO04510.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31694-RA | 811..1929 | 31..1164 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:35:47 Download gff for
FMO04510.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 2870689..2870932 | 761..1009 | 96 | <- | Minus |
| 2L | 2871004..2871688 | 76..760 | 100 | <- | Minus |
| 2L | 2873636..2873679 | 31..75 | 95 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:48:10 Download gff for
FMO04510.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 2870689..2870932 | 761..1009 | 96 | <- | Minus |
| arm_2L | 2871004..2871688 | 76..760 | 100 | <- | Minus |
| arm_2L | 2873636..2873679 | 31..75 | 95 | | Minus |
