FMO04512.5prime Sequence
1232 bp (1044 high quality bases) assembled on 2008-08-04
> FMO04512.5prime
CGTATAGCATACATTATACGAAGTTATCAGTCGACATGAGGGACAACAAA
AAAGGACCCGTCATCGGCATCCGACACATGCAGGCCCTCCTCTTATTCTT
GGCCATCGTCGTGAACTACACAGCCCGGCTCAGCGTTAGCGTAGCAATAG
TTGCTATGACGGATGCGGCCACTACTAACTTGGACTTTCCTGAGTACAAC
TGGAATGGTGTGCAGCAATCATACATTCTGTCCAGCTTCTACTGGGGATA
CATCGTCACTCAATTTCCAGCCGGTTTTCTCGTTCGCCGCTTCGGGGCTA
AGGCGGTGCTGCTCGTCCCCACGCTGGCTACGGCCGTCCTGAGCGGTCTC
ACACCGTATTGCGTGGCCTGGGGTGGCTGGCAGGCTTTTTGCACCATCCG
GATTGTGGAGGGTCTTTTTCAAGGTCTAATCTTTCCGTGCATACATGAGC
ACCTGGCCAAGTGGTCTCCGCCAGAGGATCGAAACCGACTGGGCGCCTTT
GCGTACTCTGGAGCCGACTGCGGATCAGTGCTGGCCATGGCTAGCAGCGG
TCTTATTGCGAATGGATCAATGGGCTGGCCTGGAATTTTCTACGTGTCGG
CGGGCACTTGCGGGCTGTGGTGCCTACTGTGGGTGCTATTCGGCGCTAAC
AACGCGCCCAGTTCCCGGCTAATCGGTTCCCGGGAACGGGAGCACATCGA
GCGCTCTATGAAGCGGCAGGATGGCTTTCACGCACAGAAGATTCCAATCC
CGTGGCGGGCCATCTGGTCATCCAGTCCGTTCTACGCACTGTTGGTGGTA
CGGAGCGCTCAGGGCTGGGCCAACTCCACCATGCAACTGCAGACACCGTC
CTACATGCACGGCGTCCTGGAGATGGACATAAAAGCAACGCTCTCTACTC
GGCCCTGCCCTTTCTGGGCATGTGGGGTATGTCGTATGTATACCTGGTTT
TCGCAGATGTGGCCATGTCGAGGCAATGGATGTCCCTAACCACGCTGCGC
AGGTCAATTACACCGGTTTCTATTGGGGACTGCGGCGGCCCTTATGGATT
GGCTTTCTTGGATAGAGCGAACAACTTCTGGCCATCGCACTGATGACAAT
CACGCTGACTAATGCTTGGCTCTGGGGATTGGCAGCATCTTGACCATATC
CGACTGTCCAACATTGAATGCTTATGGCAATAGGAAGTGCAATGGCACCT
CTTTCCGCCTCCCTAAGCGCGCGCCTCTTGAT
FMO04512.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:07:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7881-RB | 2807 | CG7881-RB | 148..1336 | 36..1208 | 5175 | 96.7 | Plus |
| CG7881-RA | 2084 | CG7881-RA | 148..1336 | 36..1208 | 5175 | 96.7 | Plus |
| CG9826-RC | 2096 | CG9826-RC | 431..662 | 367..598 | 290 | 76.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:07:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 5962116..5963031 | 1102..192 | 4155 | 97.9 | Minus |
| 2R | 25286936 | 2R | 5963093..5963232 | 192..53 | 700 | 100 | Minus |
| 2R | 25286936 | 2R | 22841231..22841462 | 367..598 | 260 | 74.1 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:07:38 has no hits.
FMO04512.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:44:37 Download gff for
FMO04512.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7881-RA | 140..1324 | 27..1197 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-04 11:00:46 Download gff for
FMO04512.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7881-RA | 120..1304 | 27..1197 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:59:43 Download gff for
FMO04512.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7881-RA | 140..1324 | 27..1197 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:59:43 Download gff for
FMO04512.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 5962011..5963031 | 192..1197 | 96 | <- | Minus |
| 2R | 5963094..5963230 | 55..191 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:44:37 Download gff for
FMO04512.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 1849516..1850536 | 192..1197 | 96 | <- | Minus |
| arm_2R | 1850599..1850735 | 55..191 | 100 | <- | Minus |
