FMO04513.5prime Sequence
917 bp (917 high quality bases) assembled on 2008-08-04
> FMO04513.5prime
TCGTATAGCATACATTATACGAAGTTATCAGTCGACATGTCGTATCGCCG
TAGTCAAACAATCTGTCGCTTCCATTTGCTTGGAATTTGTCGTTTTGGTG
ATTTATGCCGATTCTCGCACGACGAGACGACACCAAATGACAACCAGAGT
CCGCAGATATCGGAAATCGCGGATGAAGTCGTGGAGAATGAGCAAGTGGT
GGCCTCCACCAGTAGCTACAGTCGCCAGATGACCTGGGCAAATGCACCAG
AGTTTATTCCCAGGTACAAAGCCAATTCTGCCGATTTCCAAGCAACTGAA
GGTGTCCAGGATATTTGTCCATATGGTGGCAGCTGTATCTGGGGCAGTAA
GTGCTCGTATCCACTTCACATGGAGATTTGCAAGATGTGCGACCTTTACT
GCCTCCACCCGATGGATCAGAACCAACGCCGTGCGCACAATCGTGAGTGT
CTGGAGCAGCACGAGCAGGCGATGGAGCTATCTTTTGCAATAGCCAGATC
CAAGGACAAGATGTGCGGCATTTGTTTCGATACCGTCGTGGAGAAGAAGG
GACGTGAACGTCGCTTTGGCATCTTGTCCAAGTGCAAGCACATATTCTGT
TTGACGTGCATTCGCACATGGCGTCAGGCCCATCAATTTGAGGCCACTGT
GACGCGTGGTTGCCCCGAATGTCGCGTCTTTTCGGAATTCGTGTGCCCTA
GTGCCTACTGGGTGGATACAAAGGAGGAGAAGGACAAGTTGCTAAGCGAA
TATCGCGCGGCAATGGGCGCCAAGGATTGCAAGTACTTCAATGGGGGCTT
GGGCAAATGTCCCCTTTGGAAACAAGTGCTTCTACAGGCACCATTCGTCC
GTTGTGACGATAACCAGACACAATCGAATTGCCGTCAATTCAGACGCAGC
TTTTCAAAACCATTCGT
FMO04513.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:44:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5347-RA | 1210 | CG5347-RA | 105..959 | 37..895 | 4165 | 99.3 | Plus |
| CG5334-RA | 992 | CG5334-RA | 251..629 | 467..846 | 1410 | 91.6 | Plus |
| Mkrn1-RC | 2229 | CG7184-RC | 696..1171 | 365..841 | 740 | 77.4 | Plus |
| CG5334-RA | 992 | CG5334-RA | 81..202 | 60..184 | 245 | 82.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:43:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 14776878..14777732 | 37..895 | 4065 | 99.3 | Plus |
| X | 23542271 | X | 14775558..14775936 | 467..846 | 1385 | 91.6 | Plus |
| 3L | 28110227 | 3L | 21532353..21532630 | 642..365 | 460 | 77.7 | Minus |
| 3L | 28110227 | 3L | 21531848..21532028 | 841..660 | 290 | 78.6 | Minus |
| 3L | 28110227 | 3L | 18722609..18722851 | 735..493 | 270 | 74.1 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:43:59 has no hits.
FMO04513.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:40:39 Download gff for
FMO04513.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5347-RA | 99..959 | 27..895 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-04 11:02:42 Download gff for
FMO04513.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5347-RA | 99..959 | 27..895 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:13:10 Download gff for
FMO04513.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5347-RA | 99..959 | 27..895 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:13:10 Download gff for
FMO04513.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 14776872..14777732 | 27..895 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:40:39 Download gff for
FMO04513.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 14670905..14671765 | 27..895 | 98 | | Plus |
