FMO04514.5prime Sequence
846 bp (846 high quality bases) assembled on 2008-08-04
> FMO04514.5prime
CTTCGTATAGCATACATTATACGAAGTTATCAGTCGACATGGAGTACGGT
AGATTTCAAACGGTCGGTTGTCTGTTGATCATCCTGGGTATGGCCAGTTC
TCAGCCCCTGTCCTGGTGTGATCCGGACTTATGTCCTGACAACACGGTGC
ACATAGCGTGTAATAACGATGGTAAATTCCATGAAAGCTGCTCCCCGGAT
GCCACTATGGTGGACCTGAAGCCTTATCGCAAACTTATCGTGAATGAGCA
CAACAAGCGCAGGAACTACATTGCCTCTGGATCTTTGCCCGGCTACTATC
CGGCCACCCGCATGGCCACCATGGTGTGGGATGAGGAGCTGGAGTACCTG
GCCACGTTGAACCTGAAAACCTGTTACCTGGAGCACGACGACTGCCACAA
CAGCTACCGCTTCCGGAATCTGGGTCAGAATCTCTGCGGTGTCGATCGTC
GGAGGAACTGGGACTTGAACGTGACCAATCTGGTGGAGCAGTCGATGGGC
TTGTGGTTTGGAGAGCACAAACTCATCGACAGCAGTTACATTACCGATTT
TAAGCTGACCAAAGACCTCGAAAAGTATGGACACTTTGTGGAAACCGTGC
TGGACAGGAACACCCATGTGGGCTGTGCCATGATGCGCTTCACCAATCCG
CAGTACCCCTTCCTCTACATCTACAATACTGCCTGCAACTATGCCAGTGT
CTATGCCATCGGAGTTCCTGTTTACATGCCGGAAAGCCCGCCCTCTGAAT
GCCGGACGGGAAGTAATCCAGAGTATCCCGCACTCTGTTCCATCAAGGAA
CAATACAATCCAAACCACAATTTTCTACGCAAGTTTCTAGAACCAT
FMO04514.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:52:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9822-RA | 883 | CG9822-RA | 36..822 | 37..823 | 3890 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:52:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 21347260..21347654 | 568..174 | 1975 | 100 | Minus |
2R | 25286936 | 2R | 21346936..21347190 | 823..569 | 1180 | 99.2 | Minus |
2R | 25286936 | 2R | 21347712..21347848 | 173..37 | 685 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 21:52:54 has no hits.
FMO04514.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:48:18 Download gff for
FMO04514.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9822-RA | 25..826 | 25..828 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-04 11:02:43 Download gff for
FMO04514.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9822-RA | 2..797 | 36..829 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:35:53 Download gff for
FMO04514.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9822-RA | 25..826 | 25..828 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:35:53 Download gff for
FMO04514.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 21346932..21347190 | 569..828 | 98 | <- | Minus |
2R | 21347260..21347654 | 174..568 | 100 | <- | Minus |
2R | 21347712..21347857 | 29..173 | 97 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:48:18 Download gff for
FMO04514.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 17234437..17234695 | 569..828 | 98 | <- | Minus |
arm_2R | 17234765..17235159 | 174..568 | 100 | <- | Minus |
arm_2R | 17235217..17235362 | 29..173 | 97 | <- | Minus |