Clone FMO04518 Report

Search the DGRC for FMO04518

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:45
Well:18
Vector:pMK33-CFH-BD
Associated Gene/TranscriptCpr78E-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO04518.5prime Sequence

465 bp (465 high quality bases) assembled on 2008-08-04

> FMO04518.5prime
TCGTATAGCATACATTATACGAAGTTATCAGTCGACATGTTTAAGATTCT
CATCGTCGCCCTGTCCCTTTGCACGGCCGTCGTGCTGAGTGCTCCAGTGG
ACCACGTCACATCCACCACCCAGCCACCGGTGGCCATTCTCGAATCATCT
CACGAAAAGCACGAGGATGGATCGTACAACTTCTCTTACCTCGGCGAGGA
CGGCACCCACAGAAGGGAGGAGGCCGTGGTCAGAAACCAAGGCACCGAGA
ACGAGTACCTGGAGATCAGCGGCTCCTACTCCTACTTCGATGCCAACGGA
CAGGAGGTGACCGTCACCTACAAGGCCGATGACCACGGATTTGTACCAGA
GGGCGGAGCAATCCTGCCCCAGATTTCGCTGGCCGCCAAGCAGGTCAGCG
AGCAGGTGCCCCAACCAGATCTTGACTATGCTAAGCCTCCTAAGGTCGCA
AGCTTTCTAGACCAT

FMO04518.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:14:30
Subject Length Description Subject Range Query Range Score Percent Strand
Cpr78E-RA 463 CG7160-RA 24..435 36..447 2060 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:14:28
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 21666480..21666878 447..49 1995 100 Minus
Blast to na_te.dros performed on 2014-11-28 22:14:29 has no hits.

FMO04518.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:56:01 Download gff for FMO04518.5prime
Subject Subject Range Query Range Percent Splice Strand
Cpr78E-RA 18..438 29..451 98   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-04 11:02:46 Download gff for FMO04518.5prime
Subject Subject Range Query Range Percent Splice Strand
Cpr78E-RA 18..438 29..451 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:53:35 Download gff for FMO04518.5prime
Subject Subject Range Query Range Percent Splice Strand
Cpr78E-RA 18..438 29..451 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:53:35 Download gff for FMO04518.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 21666477..21666878 49..451 99 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:56:01 Download gff for FMO04518.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 21659577..21659978 49..451 99 <- Minus