FMO04519.5prime Sequence
1094 bp (1015 high quality bases) assembled on 2008-08-04
> FMO04519.5prime
AACTTCGTATAGCATACATTATACGAAGTTATCAGTCGACATGAGTGCAC
CCACGGATTACCTGTTCTGCCCGCTGGCATATGGGTCAGCTCTTTCGGCC
ATCGGAATCTATCTGCTCCGACAATATATGCAGGGAGGTCAGTTCACCAC
GAAAACGAATGAGACCGGCAGAGTGGCGATTGTGACCGGCTGCAACCAGG
GGATTGGCAAGGAGACCGTTCTGGAGCTGGCCCGCAGGGGAGCTACCGTG
TACATGGCTTGTCGGGACATGAAGAAGTGCGAGAATGCCCGTCGGGAGAT
CATCAAAGCGACCAACAACCAGAACATCTTCGCACGCCAATTGGACCTGT
GCTCCATGAAGTCCATTAGGAACTTCGCTGCTGGCTTTAAGCGGGAGCAA
AACAAGCTTCACATTCTTATCAACAACGCCGGCATTATGGACTGCCCCAA
AATGCTGACGGAGGACGGATTTGAAATGCAAATCGGAGTGAATCACATGG
GCCACTTCCTCCTCACACTTCTGCTTCTCGATGTCCTGAAGAGTTCCGCG
CCCAGTCGCGTTGTGGTCCTGTCCAGCATTGCTCACCGCTTCGGAAGGAT
TAAGCGTGACGACCTGAATAGCGAAAAAGTCCTATGACAGAAAGATGGCC
TACTGTCAGAGCAAATTGGCCAACGTCCTCTTCACCAGGGAGTTGGCGAA
ACGCCTGAGCGGAACAGGGGTCACGGTAAATGCCCTACATCCCGGAGTAG
TAAACACGGAACTGTTCCGCAATACACCCTTTTTGGGTTCGTGGTTTGGA
AAATTGCTCATAGCCCCTATTATATGGATATTCATAAAGACGGCTAGGAA
TGGCGCACAGACGACCCTGTACGCTGCCCTGGATCCCAGTTTGGAAAAAG
TATCTGGAAGATACTTCAGCGATTGCAAGCAGAAGCACGTGGGCTCGGCC
GCCCAGTATGACGATGATGCCCAAATTCCTATGGGCGGAAAGTGAAAAGT
GGAACCGGAAATTAATAATAGCCAGCCTCTAGATCCATTCGTTTGGGCCG
CGGCGGGGCCCAGGTAGGTGGTTCTAATCATAATTCATATCATT
FMO04519.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:14:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2070-RB | 1381 | CG2070-RB | 183..1155 | 41..1017 | 4765 | 99.4 | Plus |
| CG2070-RA | 1105 | CG2070-RA | 56..1028 | 41..1017 | 4765 | 99.4 | Plus |
| CG2065-RB | 1233 | CG2065-RB | 181..822 | 123..765 | 595 | 73.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:14:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 7662498..7662915 | 384..802 | 2030 | 99.5 | Plus |
| 2R | 25286936 | 2R | 7662165..7662429 | 120..384 | 1325 | 100 | Plus |
| 2R | 25286936 | 2R | 7662971..7663170 | 803..1003 | 955 | 99.5 | Plus |
| 2R | 25286936 | 2R | 7662037..7662116 | 41..120 | 400 | 100 | Plus |
| 2R | 25286936 | 2R | 7664035..7664296 | 123..384 | 350 | 75.6 | Plus |
| 2R | 25286936 | 2R | 7664680..7664797 | 648..765 | 215 | 78.8 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:14:16 has no hits.
FMO04519.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:55:52 Download gff for
FMO04519.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2070-RA | 56..1030 | 41..1020 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2010-07-30 09:29:12 Download gff for
FMO04519.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2070-RA | 26..1000 | 41..1020 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:53:29 Download gff for
FMO04519.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2070-RA | 56..1030 | 41..1020 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:53:29 Download gff for
FMO04519.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 7662030..7662116 | 37..120 | 95 | -> | Plus |
| 2R | 7662166..7662429 | 121..384 | 100 | -> | Plus |
| 2R | 7662499..7662915 | 385..802 | 99 | -> | Plus |
| 2R | 7662971..7663179 | 803..1011 | 97 | -- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:55:52 Download gff for
FMO04519.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 3549535..3549621 | 37..120 | 95 | -> | Plus |
| arm_2R | 3549671..3549934 | 121..384 | 100 | -> | Plus |
| arm_2R | 3550004..3550420 | 385..802 | 99 | -> | Plus |
| arm_2R | 3550476..3550684 | 803..1011 | 97 | -- | Plus |
