FMO04521.5prime Sequence
477 bp (477 high quality bases) assembled on 2008-08-04
> FMO04521.5prime
ACTTCGTATAGCATACATTATACGAAGTTATCAGTCGACATGAAGGCTTT
CTTTGCTCTGGTGCTCCTGGCCATTGCCGCTCCTGCCCTGGCAGGTCGCA
CCCTCGACCGCTGCTCGCTGGCCCGCGAGATGGCCGACTTGGGAGTTCCC
CGCGACCAGCTGGACAAGTGGACCTGCATTGCCCAGCACGAGAGTGACTA
CCGCACCTGGGTGGTGGGACCTGCCAACTCCGATGGCTCCAACGACTACG
GAATCTTCCAGATCAACGATCTGTACTGGTGCCAGGCCGACGGACGCTTC
TCCTACAACGAGTGCGGCTTGAGCTGCAATGCCCTCTTGACCGACGACAT
CACCAACTCTGTCCGTTGCGCCCAGAAGGTCCTCAGCCAGCAGGGATGGT
CCGCCTGGGCCGTCTGGCATTACTGCAGCGGATGGTTGCCGTCCATCGAT
GAGTGCTTCGCAAGCTTTCTAGACCAT
FMO04521.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:43:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| LysS-RA | 492 | CG1165-RA | 24..445 | 38..459 | 2110 | 100 | Plus |
| LysB-RB | 611 | CG1179-RB | 22..443 | 38..459 | 1025 | 83.9 | Plus |
| LysB-RA | 486 | CG1179-RA | 22..443 | 38..459 | 1025 | 83.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:43:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 1227770..1228191 | 38..459 | 2110 | 100 | Plus |
| 3L | 28110227 | 3L | 1207392..1207813 | 38..459 | 975 | 83.1 | Plus |
| 3L | 28110227 | 3L | 1212952..1213371 | 40..459 | 950 | 82.7 | Plus |
| 3L | 28110227 | 3L | 1210758..1211126 | 459..94 | 895 | 83.5 | Minus |
| 3L | 28110227 | 3L | 1218286..1218595 | 433..127 | 735 | 83.2 | Minus |
| 3L | 28110227 | 3L | 1194874..1195241 | 458..94 | 560 | 77.4 | Minus |
| 3L | 28110227 | 3L | 1210536..1210724 | 94..282 | 495 | 84.1 | Plus |
Blast to na_te.dros performed on 2014-11-28 18:43:20 has no hits.
FMO04521.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:18:30 Download gff for
FMO04521.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| LysS-RA | 21..455 | 35..470 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-04 10:57:59 Download gff for
FMO04521.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| LysS-RA | 1..434 | 36..470 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:34:20 Download gff for
FMO04521.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| LysS-RA | 21..455 | 35..470 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:34:20 Download gff for
FMO04521.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 1227764..1228201 | 32..470 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:18:30 Download gff for
FMO04521.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 1227764..1228201 | 32..470 | 98 | | Plus |
