Clone FMO04523 Report

Search the DGRC for FMO04523

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:45
Well:23
Vector:pMK33-CFH-BD
Associated Gene/TranscriptTrf4-2-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO04523.5prime Sequence

1252 bp (1013 high quality bases) assembled on 2008-08-04

> FMO04523.5prime
ACTTCGTATAGCATACATTATACGAAGTTATCAGTCGACATGTGTGACGA
AGCGAATCCAGCGAAGCCGTGGCAGCTTCCCGATGTGGTGTACGGCAATG
GGATTCCGGCGCTGTGCCTGCTGCACCAGGAGATCGAGCAGTTCTACAAC
TACATCCGGTCCACGCCAACAGAGTTCTGCTTGCGGGCAGGTGCAGTGCG
TCGCATCGAGGATGTGGTGCTTTCCATTTGGCCAAGCGCATCCGTCGATC
TCTTTGGCTCATTTCGGACCGGGCTAAATCTGCCGGACTCGGACATTGAT
CTGGTTGTGTACTATAAGTTCTGGAACCCCAGGCTGCTGCATGAGCTTCA
AAACGAACTAGTCAGCCAAGGAGTAACTGATCCGGACACTGTGACCGTCC
TCGACAAGGCCTCTGTGCCAGTGGTCAAGTTTACGGACCTCATTTCCCGC
ATCAGGTTCGATGTGACCTTCAACTCCGTAGCATCCGGCGTTCAGGCCGC
CGACCTGATCAAGGACTTTATCCGCCATTTTCCCGAACTACCCAAACTGG
TCATGGTGCTCAAGCAGTTCCTCAGCCTTCACGGATTCAACGAGGTCTAC
AACTCCGGCGGAGTCTCGTCCTACGCACTCACGCTAATGGTGATCAGCTT
TCTGCAGCAGCATGCGCGCTCCAACAGGCGTTTAAGTGAACACAGTAAGC
TGGCCCTGCTGCTCATTCAGTTTCTAGACTACTACGGCCGCAAGTTTGAC
TTCTTCAAGTATGGAATTTCTGTCCTCGGCCCAGGCGGTTGCGTGGAGAA
GGCTCGACTTCCGCTCCACGCTCGGCGAGAACAACTGGGCAGTCGGTGCT
TTGCATAGAGGATCCAGTGACGCCGACCAAACGACATAAGGGAGGAGCTC
CTATGGGGGTGCTCGGCGTGATGCAGGGATTCGGGGCAGCCCTTCGTGAA
GCTCTCGAAGCTGGTGGACTCCGACTCGTCCCAGAATCGTCGGCCCCATA
CTGGGCAACATTTGAAAAGGTGCCGCAGTCCATCATCAACTACCGGGCTT
GGGTGGCACATACAACTTCCAGCACCGTTTGACACCGGGAATTGCCCTTG
GGTCGCGATTCCCTTGTACACCGGTCGCCTACGGGGAATCCACATTCCCC
TCCGCCTCGGCCTACAGCTATCGGAGGATGAGGCCTCGGGCGCCGCTACT
ATTGGGATCGGCCCGATGTAGTTATCTCCTCCTCCAACCATAAGCACTTG
CG

FMO04523.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:37:00
Subject Length Description Subject Range Query Range Score Percent Strand
Trf4-2-RB 1429 CG17462-RB 146..1309 40..1219 5115 96.6 Plus
Trf4-2-RA 1870 CG17462-RA 356..1519 40..1219 5115 96.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:36:57
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 24925571..24926678 40..1163 4730 97.4 Plus
Blast to na_te.dros performed on 2014-11-28 19:36:58 has no hits.

FMO04523.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:34:55 Download gff for FMO04523.5prime
Subject Subject Range Query Range Percent Splice Strand
Trf4-2-RA 356..1470 40..1172 97   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-04 10:57:58 Download gff for FMO04523.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17462-RA 267..1381 40..1172 97   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:21:33 Download gff for FMO04523.5prime
Subject Subject Range Query Range Percent Splice Strand
Trf4-2-RA 356..1470 40..1172 97   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:21:33 Download gff for FMO04523.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 24925571..24926685 40..1172 97   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:34:55 Download gff for FMO04523.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 20751293..20752407 40..1172 97   Plus