FMO04525.5prime Sequence
1140 bp (960 high quality bases) assembled on 2008-08-04
> FMO04525.5prime
CTTCGTATAGCATACATTATACGAAGTTATCAGTCGACATGTCGAATGTG
TGGGGCAAACTGGTGCTGAAGTTCTTTAAATATGCGCCCAGCTATGTGGT
CTGCCTGTGCTTCCTGCCCTGCGGCATGATCTTTGGCTATACGATCTGCG
CCTTTGTTGCGGAGCGGAACCTCAACGCTGGACTCATTCACTATGGACCA
TTGATTCTGGGCGCCTGCTGGGCGTTGATCACTGCCCTGGCCATGCTGAC
GGTCAAGTTCGTGAAGAAGTGCATCGTCTACTGGCAGCCATGGCTGCTCC
TGGCAGCCGGAGTCTTTAATCTCATAGGCAGCTGCTTCTACTTTGCCGAT
GGATTTGACCACGTCGGAGCCTATATATCGTACTTGGCGCACAGCATGAC
CTTCGTGGCCGGCTATAGCTTCCTGCTCACGATCAGCTCCAAGGGCAGCA
AGTCGCTGTTCCTCTCGGGCAGCTGCAGCTGCTACCTGCTGGGCGTGGCG
TCCGCCGTCAGCCTGATCGTGGCCTCCTACAGCCGGAATGTAAAGGAGCT
GGCCGGACAGACGGTGACCACGGAGCAACTGATCGATGGCATCTATGTAA
ACTTCGCCGGCACCTACTTGAGTGTGGCGGCCGCCGTGTTGGCCATTCTG
GTGGGCCAGAAGGTGCTCCACTTTCTGGGCACCGTCGACCTGGTGAACAG
CATGGACAACGACCTGCGGATCGCCAACTCGAATGGCAGCATCTTCGAGC
AGCGATCGGAGGTCATCAAGCGACTGCAGTTCTTCTACGTGACCAAGAAC
CAGCAGTGGAACATAATGCTACTGCTCCTCTTCACGGAGGCCGTGCAGTT
CGCCCTGTTCGTGTACTTTGTCTACTGGTTTGCCCTAATCCCGGCCATCC
CGGCTGAAAGAGTTCTCCGCATCGACGGCATGTTCTGGGTGATCTTTGCA
GGCAGCCTGCTGACCTCATCTGCAGTGGATCCTGTCGTGAAGTCACTATT
GTGGCTTCGCAGTGCCCTCATCTCCTCACTCTGCTGCATGATCCCTCTGC
CACGTACGGACTCAGAGGTCGCTCTGGCTGCTCATGGGTCCTTTGCATGT
CGAATCGCTCACTCGATTTCCCTGCTGGAGTCCACCATTC
FMO04525.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:01:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7992-RA | 1693 | CG7992-RA | 137..1192 | 39..1083 | 4700 | 97.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:01:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 19245764..19246396 | 987..357 | 2850 | 98.1 | Minus |
| X | 23542271 | X | 19246737..19246995 | 357..99 | 1295 | 100 | Minus |
| X | 23542271 | X | 19247054..19247114 | 99..39 | 305 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:01:39 has no hits.
FMO04525.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:49:45 Download gff for
FMO04525.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7992-RA | 137..1200 | 39..1092 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-04 11:02:50 Download gff for
FMO04525.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7992-RA | 106..1169 | 39..1092 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:34:19 Download gff for
FMO04525.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7992-RA | 137..1200 | 39..1092 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:34:19 Download gff for
FMO04525.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 19245651..19246395 | 358..1092 | 95 | <- | Minus |
| X | 19246737..19246994 | 100..357 | 100 | <- | Minus |
| X | 19247054..19247114 | 39..99 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:49:45 Download gff for
FMO04525.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 19139684..19140428 | 358..1092 | 95 | <- | Minus |
| arm_X | 19140770..19141027 | 100..357 | 100 | <- | Minus |
| arm_X | 19141087..19141147 | 39..99 | 100 | | Minus |
