Clone FMO04526 Report

Search the DGRC for FMO04526

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:45
Well:26
Vector:pMK33-CFH-BD
Associated Gene/TranscriptTsp66A-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO04526.5prime Sequence

361 bp (361 high quality bases) assembled on 2008-08-04

> FMO04526.5prime
GTATAGCATACATTATACGAAGTTATCAGTCGACATGATGCTGACTATAC
TGTTTGCACAACAGTACCAAATTGTTGGAGATGTACTTCGAATATGGATG
AATCGCAAGAGTTTGGAATTCTACGAAAGTCGCTGCCAGTGCTGCGGAGT
TTTGGGACCTGACGACTACAAGTTGGGCGATCTGAATATCCCAAAATCCT
GTTACAAGAATGGCAGTGAAAGGGATGAGGACCTGTACCGATCAGGCTGC
TCCACGCGCTCCATAAAGCCCGCGTCGCCCATCATCCATGTGATCTCCTT
CGTAATTCAGTCATATGCATTGAGGTATTCCTTATTATCCTGTGCAAGCT
TTCTAGACCAT

FMO04526.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:16:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG42661-RB 2597 CG42661-RB 1659..1977 35..343 1435 96.9 Plus
CG42661-RA 2531 CG42661-RA 1593..1911 35..343 1435 96.9 Plus
CG42660-RB 2597 CG42660-RB 1659..1977 35..343 1435 96.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:16:29
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 7467920..7468096 134..310 885 100 Plus
3L 28110227 3L 7467760..7467858 35..133 495 100 Plus
Blast to na_te.dros performed 2014-11-28 20:16:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\ninja 6644 Dsim\ninja DSRN 6644bp Derived from D83207 (Rel. 53, Last updated, Version 4). 4216..4286 270..200 103 60.6 Minus

FMO04526.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:30:15 Download gff for FMO04526.5prime
Subject Subject Range Query Range Percent Splice Strand
Tsp66A-RA 220..532 35..348 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-04 10:59:28 Download gff for FMO04526.5prime
Subject Subject Range Query Range Percent Splice Strand
Tsp66A-RA 220..532 35..348 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:57:14 Download gff for FMO04526.5prime
Subject Subject Range Query Range Percent Splice Strand
CG42660-RB 1659..1981 35..348 96   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:57:14 Download gff for FMO04526.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 7467760..7467858 35..133 100 -> Plus
3L 7467920..7468096 134..310 100 -> Plus
3L 7468156..7468192 311..348 94   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:30:15 Download gff for FMO04526.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 7460860..7460958 35..133 100 -> Plus
arm_3L 7461020..7461196 134..310 100 -> Plus
arm_3L 7461256..7461292 311..348 94   Plus