FMO04529.5prime Sequence
608 bp (608 high quality bases) assembled on 2008-08-04
> FMO04529.5prime
ATAGCATACATTATACGAAGTTATCAGTCGACATGTGTTTTTACGGACCT
GTTTCGTTCATAAAAAAGATCCTGCCCGCAGGCTCTCAGAAATCATGTCT
GCTCATTTTAGGATTAGACAATGCGGGAAAATCCACGTTGACAGACCGCC
TGGCGGAAATTTTCAATGGAGAATCCAAGGAATCTAACAATCAAGTTAGT
GAATGGAGCTTCACCATAAATAATTTCAGAGTCCAGTTGTGGGATATTAA
CGGAGAACTGAAGAATCGCCAGATCTGGCCAAAGTATTATAAGAAAGTGA
ATGTTTTGATTTTTGTACTGGATAGCACGGATGCACTGCGGCTAAGCGAG
GCGCGATGTGTTTTATGCGATGTTTTGATGCACCAGGAACTGGATAATGC
TCCGCTGCTGATCGTGTCCAACAAGAAGGACGCCTCGGGATCCCTGTCCA
TGTCCACGGTTATCGATTTGATGGGCCTATATCGCCTAACTGGTCGAGAT
TGGACTTTTGAGGAATGTTCCATGCGGACAGGGTCTGGTGTTCAGGAGAT
CGTAAATTGGATTAACGAAAAGATCAACAATAACAGGAAGGCAAGCTTTC
TAGACCAT
FMO04529.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:24:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17819-RA | 646 | CG17819-RA | 15..573 | 32..590 | 2795 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:24:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 21884902..21885140 | 546..308 | 1195 | 100 | Minus |
| 3R | 32079331 | 3R | 21885395..21885536 | 173..32 | 710 | 100 | Minus |
| 3R | 32079331 | 3R | 21885198..21885332 | 308..174 | 675 | 100 | Minus |
| 3R | 32079331 | 3R | 21884801..21884847 | 590..544 | 235 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 23:24:58 has no hits.
FMO04529.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:22:29 Download gff for
FMO04529.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17819-RA | 11..573 | 28..590 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-04 10:57:45 Download gff for
FMO04529.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17819-RA | 11..573 | 28..590 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:11:12 Download gff for
FMO04529.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17819-RA | 11..573 | 28..590 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:11:12 Download gff for
FMO04529.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 21884801..21884845 | 546..590 | 100 | <- | Minus |
| 3R | 21884903..21885139 | 309..545 | 100 | <- | Minus |
| 3R | 21885198..21885332 | 174..308 | 100 | <- | Minus |
| 3R | 21885395..21885540 | 28..173 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:22:29 Download gff for
FMO04529.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 17710920..17711054 | 174..308 | 100 | <- | Minus |
| arm_3R | 17710523..17710567 | 546..590 | 100 | <- | Minus |
| arm_3R | 17710625..17710861 | 309..545 | 100 | <- | Minus |
| arm_3R | 17711117..17711262 | 28..173 | 98 | | Minus |
