FMO04531.5prime Sequence
587 bp (587 high quality bases) assembled on 2008-07-30
> FMO04531.5prime
ATTATACGAAGTTATCAGTCGACATGAGCCCCTCAATCAGCGCGGAAGAC
AAGCTAGACTATGTAAAGAGCAAGATTGGCGAGTATCCGAACTTCCCAAA
GGAGGGCATTCTGTTCCGTGACATATTCGGAGCCCTCACCGATCCGAAGG
CATGTGTGTACTTGCGCGATTTGCTTGTTGATCACATCCGGGAAAGTGCT
CCCGAGGCGGAGGTCATCGTGGGACTGGACTCGCGGGGCTTCCTCTTTAA
TCTCCTCATAGCCACCGAGCTGGGCCTGGGATGTGCTCCGATTCGCAAGA
AGGGCAAGCTGGCGGGAGAAGTGGTTTCCGTGGAATACAAACTGGAGTAC
GGTATTGACACCTTTGAGCTGCAAAAATCCGCCATCAAGCCCGGCCAAAA
AGTCGTTGTCGTTGACGATCTACTAGCCACAGGTGGTTCCCTGGTGGCCG
CCACTGAACTCATCGGCAAGGTGGGTGGCGTTGTCGTGGAGAGCCTGGTG
GTCATGGAACTAGTTGGACTGGAGGGTCGCAAAAGGCTGGATGGAAAAGT
GCATTCCCTCATTAAGTACGCAAGCTTTCTAGACCAT
FMO04531.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:12:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Aprt-RA | 797 | CG18315-RA | 108..653 | 24..569 | 2730 | 100 | Plus |
| Aprt-RD | 924 | CG18315-RD | 235..780 | 24..569 | 2730 | 100 | Plus |
| Aprt-RC | 894 | CG18315-RC | 108..653 | 24..569 | 2730 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:12:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 1884322..1884561 | 357..118 | 1200 | 100 | Minus |
| 3L | 28110227 | 3L | 1884036..1884248 | 569..357 | 1065 | 100 | Minus |
| 3L | 28110227 | 3L | 1884691..1884785 | 118..24 | 475 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 21:12:14 has no hits.
FMO04531.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:58:59 Download gff for
FMO04531.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Aprt-RA | 92..654 | 17..577 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-30 14:42:05 Download gff for
FMO04531.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Aprt-RA | 92..654 | 17..577 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:45:10 Download gff for
FMO04531.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Aprt-RA | 99..661 | 17..577 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:45:10 Download gff for
FMO04531.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 1884028..1884248 | 357..577 | 98 | <- | Minus |
| 3L | 1884323..1884560 | 119..356 | 100 | <- | Minus |
| 3L | 1884691..1884791 | 17..118 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:58:59 Download gff for
FMO04531.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 1884028..1884248 | 357..577 | 98 | <- | Minus |
| arm_3L | 1884323..1884560 | 119..356 | 100 | <- | Minus |
| arm_3L | 1884691..1884791 | 17..118 | 96 | | Minus |
