FMO04534.5prime Sequence
465 bp (465 high quality bases) assembled on 2008-08-04
> FMO04534.5prime
TCGTATAGCATACATTATACGAAGTTATCAGTCGACATGGTCTACGTGAA
TCTAATAATAGGCTTGGGCCTGGTGTCCGTTGCCGCTTTCGCCTATTTCA
ATTGGCATAACGACCGCAGTTCGCCTTACTCCAGGTCGCCGAATGGCAGG
TGCACCTTTTGCCAGTATGAACTGAGTGATGACGACCGGCGCCGCATGAG
GTGTGGACATGCCATGCACAATCTCTGCTACTTGGTGTTTCGCTATTCCC
ATAGAAAGTGCCTCGAGTGCGATAAGGTGGTTAATGTCAATATAGCCGGT
GACTTGTGCACGATTTGTTTAGATCCCCTAAGTGTTTACACCATGGTGTA
TCTGCGCTGCAGCCACGCCTTGCATGAGAAGTGCCTCCACCAGTACCAGG
CTAATGGTGGCCGCCACTGTCCGGTCTGCAGAATGGGAATTAAGGAGGCA
AGCTTTCTAGACCAT
FMO04534.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:18:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17721-RB | 601 | CG17721-RB | 27..437 | 37..447 | 2055 | 100 | Plus |
| CG17721-RA | 844 | CG17721-RA | 270..680 | 37..447 | 2055 | 100 | Plus |
| CG17721-RC | 637 | CG17721-RC | 158..473 | 132..447 | 1580 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:18:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 11235598..11235913 | 132..447 | 1580 | 100 | Plus |
| 3R | 32079331 | 3R | 11235409..11235508 | 37..136 | 500 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 22:18:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ivk | 5402 | Ivk IVK 5402bp | 4466..4528 | 358..295 | 111 | 70.1 | Minus |
FMO04534.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:58:01 Download gff for
FMO04534.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17721-RA | 261..680 | 29..447 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2010-07-30 09:28:55 Download gff for
FMO04534.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17721-RA | 18..437 | 29..447 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:55:20 Download gff for
FMO04534.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17721-RA | 261..680 | 29..447 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:55:20 Download gff for
FMO04534.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 11235400..11235506 | 29..134 | 96 | -> | Plus |
| 3R | 11235601..11235916 | 135..452 | 99 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:58:01 Download gff for
FMO04534.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 7061122..7061228 | 29..134 | 96 | -> | Plus |
| arm_3R | 7061323..7061638 | 135..452 | 99 | -> | Plus |
