FMO04535.5prime Sequence
1026 bp (930 high quality bases) assembled on 2008-08-04
> FMO04535.5prime
TTCGTATAGCATACATTATACGAAGTTATCAGTCGACATGTCGAATAGGG
AACTGCAACTGAATTCGGGCATGAAGTGCGCCAAGTACATGCTCATCATC
GTGAGCTTCATGTTTGCGCTGACCGCCATCCTCCTGATTATGGTTGGAAC
TACGATCCAGACCATCTTCGGCGACTTCAGCCTCTTCATCGATGGACACT
TCTCGTCGCCACCGGCACTCCTCATTGCCATCGGATTCATTCTGATCGCA
GTGGCCGCACTGGGGGCCTATGGAGCCGTCAAGGAGAGTGTGATGGTCAT
TAATCTGTACGGAGTGTGCCTTTTCCTGGTGTTCATCCTCGAGGTTTCTG
CCGCCATCGCCGCCTTTGTGATGCAATCGCAGGTGAGGGGCATGCTGATC
CGAACCATGAACCAGGCCCTGGCTGAGTATGAACACGATCCCTACGTGGA
ATCTGGAGTGGACTTCATGCAATCTATGCTAGAGTGTTGCGGAGTTAATG
AGCCGGAGGACTGGAAGGACTACCTATCCGCCAATGTGAACTTCACTCTG
GGAGTGGATGACGTGGTGGTGCCCAACTCATGCTGCGGCAACCAACCAAC
AAGTCTGAACGACTCCACCCAGATGACCTGTATGGAGACCTACGACTACG
GCTGCTTCCGCAAGATGAACTTCATTGTGTCGCAGAGCGCCATGCTGATT
GCCACCGGAGCCACCACTGTGGCCTTTGTCCAGCTTCTCGGCGTGCTCTG
CGCCTTTATGCTGGCCAAGACGCTGCGCCGCACAAGTCCATCCGCGAGGC
ACGCCGCTGGCAGCTGCAGCAGAGCCTCGGCGTCCTCATCTCCGGCGGAA
AAGATGGCACCGCCCCGAATTCCGCTGTCACCGGCTATCAGCATTGGATA
ACGGAGACAGGGCTCCCATGACCCTACACCTACCCGCCCCAAAGCCCTAG
CGTTAAAGCAAGCTTTCTTAAACATTCGTTTGGGCGCCCGGGCCCAGGAA
AGGGGTCCATAATTCTTAATCCTTAA
FMO04535.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:25:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Tsp29Fb-RC | 1230 | CG9496-RC | 162..1084 | 38..956 | 4410 | 98.9 | Plus |
| Tsp29Fb-RA | 1159 | CG9496-RA | 91..1013 | 38..956 | 4410 | 98.9 | Plus |
| Tsp29Fb-RB | 1116 | CG9496-RB | 48..970 | 38..956 | 4410 | 98.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:25:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 8939115..8939597 | 478..956 | 2060 | 97.9 | Plus |
| 2L | 23513712 | 2L | 8938568..8938757 | 118..307 | 950 | 100 | Plus |
| 2L | 23513712 | 2L | 8938856..8939027 | 307..478 | 860 | 100 | Plus |
| 2L | 23513712 | 2L | 8937551..8937635 | 38..122 | 410 | 98.8 | Plus |
Blast to na_te.dros performed on 2014-11-28 23:25:44 has no hits.
FMO04535.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:23:03 Download gff for
FMO04535.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tsp29Fb-RB | 41..976 | 30..963 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-04 11:01:07 Download gff for
FMO04535.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tsp29Fb-RC | 147..1082 | 30..963 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:11:36 Download gff for
FMO04535.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tsp29Fb-RB | 41..976 | 30..963 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:11:36 Download gff for
FMO04535.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 8937544..8937631 | 30..118 | 96 | -> | Plus |
| 2L | 8938569..8938757 | 119..307 | 100 | -> | Plus |
| 2L | 8938857..8939027 | 308..478 | 100 | -> | Plus |
| 2L | 8939116..8939597 | 479..957 | 97 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:23:03 Download gff for
FMO04535.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 8937544..8937631 | 30..118 | 96 | -> | Plus |
| arm_2L | 8938569..8938757 | 119..307 | 100 | -> | Plus |
| arm_2L | 8938857..8939027 | 308..478 | 100 | -> | Plus |
| arm_2L | 8939116..8939597 | 479..957 | 97 | -> | Plus |
