FMO04536.5prime Sequence
1216 bp (1057 high quality bases) assembled on 2008-08-04
> FMO04536.5prime
CTTCGTATAGCATACATTATACGAAGTTATCAGTCGACATGGAACCGAAA
AGATGGCACTTGCATTTATCATGTTTTTTGCTACTCCTTAGTTCAACTTT
TTCTGATGTCGGGAAGATCACTTCGTCTCAAAATCATTTTGGTAACACCT
TACAAAGTCAATTTAATACGAAGAACAACACTCGAGTTATTGCACAAAAG
GGAGGACTTGCCATTCTGCCCTGTGTGGTCAAAGTTAACTCCCCAGCCAC
GGTTTCCTGGATACGTAGAAAGGACTTCCAGCTCCTGACAGTGGGCCTAT
CCACCCACAGTAGTGACAAGCGATTCTTGGTGGAGCACACGCGGCACATG
GGCCACTGGTCCCTGAGAATTAAGGCAGTTCGGGAGGAAGATCGCGGTTT
TTACGAGTGTCAATTGTCTATTTATCCAACTCAGTCAATAGTTATAGAAT
TAAAGATTGTCGAAGCGGTAGCTGAGATTTCTAGTGCACCGGAATTGCAT
ATTGATGAGACTTCTACTCTGCGACTCGAATGCAAACTGAAGCGAGCTAC
CGAGAATCCTGCATTTGTTTTTTGGTACCATGATAGTAAAATGATCAATT
ACGACTCACAAGGCGGCTTCGTTGTGACATCGATTGGGCAAAGCAATCCG
CAGAGTGGCCAGTTTTACCGTAGCTCGCCGGCGAACAAATCGCGCGCCAC
CATGCCCATGGAGTCCAGCAATGGGGTGCTCAACAGCCTGCTGGGCAGCT
CGGATGCTATCAAGGCACCGGCCGCCAATGTGCCCTCCTCCACGCCCTAT
ATGACGCAACAGCATCAATCCGCCTATCTCCTGAATCCCTCGGTCAGTGT
GCTTACTGTGAGCAAGTCATTTCCGTCATGCCGGCAACTATACATGTGCT
CCATCAAATGCCCGTCCTGCCAGCATTACAGTGCATGTTCTAAAGGGTGA
GAAACGGCGGCCATGCAGCACGCCAAATCGGAGCATTTTGATACCGGAGA
CCAACGGCAACGGCACCTTCGATTGATCACATTTGGGTGGACTGAATGGA
AACTAGCGGCGTAACCTCTGCCGGGGAATCCTCTACTTCTCTGGGCCTGT
CTGCTGATGGGCGCGGTGTATCGATCGAATTCTCGTTGCCGCACTTCAAG
GATCGTACATTAAATGTCCATTAGCAAGCGCAAGCTTTCTAGAACAATTC
TCTTGCGCTCGACTAC
FMO04536.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:07:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| dpr19-RC | 2162 | CG13140-RC | 270..1373 | 39..1138 | 5100 | 98.3 | Plus |
| dpr19-RB | 2353 | CG13140-RB | 461..1564 | 39..1138 | 5100 | 98.3 | Plus |
| dpr19-RA | 2374 | CG13140-RA | 482..1585 | 39..1138 | 5100 | 98.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:07:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 10378486..10378870 | 570..952 | 1780 | 98.7 | Plus |
| 2L | 23513712 | 2L | 10378010..10378221 | 251..462 | 1060 | 100 | Plus |
| 2L | 23513712 | 2L | 10377791..10377944 | 100..253 | 755 | 99.4 | Plus |
| 2L | 23513712 | 2L | 10378287..10378402 | 462..577 | 580 | 100 | Plus |
| 2L | 23513712 | 2L | 10378929..10379095 | 952..1118 | 385 | 90 | Plus |
| 2L | 23513712 | 2L | 10377322..10377388 | 39..105 | 335 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:07:01 has no hits.
FMO04536.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:39:20 Download gff for
FMO04536.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dpr19-RA | 482..1588 | 39..1141 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-04 11:02:48 Download gff for
FMO04536.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dpr19-RA | 468..1574 | 39..1141 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:59:27 Download gff for
FMO04536.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dpr19-RA | 482..1588 | 39..1141 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:59:27 Download gff for
FMO04536.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 10377797..10377942 | 106..251 | 100 | -> | Plus |
| 2L | 10378011..10378221 | 252..462 | 100 | -> | Plus |
| 2L | 10378288..10378399 | 463..574 | 100 | -> | Plus |
| 2L | 10378491..10378864 | 575..946 | 99 | -> | Plus |
| 2L | 10378923..10379092 | 947..1115 | 92 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:39:20 Download gff for
FMO04536.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 10377797..10377942 | 106..251 | 100 | -> | Plus |
| arm_2L | 10378011..10378221 | 252..462 | 100 | -> | Plus |
| arm_2L | 10378288..10378399 | 463..574 | 100 | -> | Plus |
| arm_2L | 10378491..10378864 | 575..946 | 99 | -> | Plus |
| arm_2L | 10378923..10379092 | 947..1115 | 92 | -> | Plus |
