FMO04538.5prime Sequence
555 bp (271 high quality bases) assembled on 2008-08-04
> FMO04538.5prime
CATTATACGAAGTTATCAATCGACATGCCAGTCATCATTTTGCAGGCCTC
CGATGGCGAAATTTTCGAGACCGACATCGGGACTGCCAAGTGCTCGAGCA
CCATTAAGACCCTATTGGAGGATTGTCCAGTGGAAGCGGAGAACGACACT
CTTATCCCGCTGCCCAATGTGAACTCCACGATCCTGAAGAAGGTCCTCAT
TTGGGCCTAGCATCATCGCGAGGACATTGCAAAGGAGAACGAAGAGGAAG
CGGCCAAGTCCGTCGCTGTGCACATCACCCCCTGGGACGCCGAGTTCCTG
TCCATGGATCAGGGCACGCTCTTCGAACTCATCTTGGCGGCCAACTACCT
GGACATTCCCAATCTGCTGAACGCCGCCTGCATGACGGTGGCCAACATGA
TTAAAGGCCGCACGACGGAGGAGATTCGCCAGACCTTTCACATAACCAAC
GATTTCTCGCCCTCCGAGGAGGATTTGATGACGATGGATTCGGAAGTCCC
GCAAGAGGACGAGGCGATATAGTACGGCGAAATTATAACAAGCTTTCTAA
AACAT
FMO04538.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:52:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| SkpF-RA | 695 | CG12227-RA | 73..586 | 24..537 | 2405 | 97.9 | Plus |
| SkpB-RA | 877 | CG8881-RA | 530..628 | 310..408 | 195 | 79.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:52:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 23458174..23458687 | 537..24 | 2405 | 97.9 | Minus |
| 2R | 25286936 | 2R | 12139544..12139642 | 408..310 | 195 | 79.8 | Minus |
Blast to na_te.dros performed on 2014-11-28 21:52:06 has no hits.
FMO04538.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:47:48 Download gff for
FMO04538.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| skpF-RA | 65..592 | 18..545 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-04 10:58:02 Download gff for
FMO04538.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| skpF-RA | 65..592 | 18..545 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:35:29 Download gff for
FMO04538.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| SkpF-RA | 65..592 | 18..545 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:35:29 Download gff for
FMO04538.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 23458168..23458694 | 18..545 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:47:48 Download gff for
FMO04538.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 19345691..19346217 | 18..545 | 96 | | Minus |
