FMO04539.5prime Sequence
696 bp (696 high quality bases) assembled on 2008-07-30
> FMO04539.5prime
CATTATACGAAGTTATCAGTCGACATGCTGTCCTACATAAAGCGCAAGCT
CTCCGAATCCGACAGCGGCGTCAGTTCGGTCGCAACTGTGACGTCGTCGT
GCGGCGGCGATAGTGGGAGAGCGGGCGGAACGGGCAGCAGTGAAAGCGGT
ACGGGCAGCAGCAGCGCCAGTATCAGCGGACGCAGCCAGAACGCCGACGA
GTTAGTGCGCAAAACGAGCCAGATGTCGATGGATGATGAGGCCATTGCCT
TCGGGGAGGACGCACTGCTCCATGAACTGGGCTACAAGAATCAGACGGAA
CTGCAGGAAACCATCTACGATCTGTTGCGCGGCATTCGCGATCCCGAGAA
GCCGTGCACTTTGGAGGACCTCAACGTTGTCTACGAGGATGGAATCTTTG
TGATGCCGCCCACGCGCTCCAATGTCTCAGTTGTTCGCATCGAGTTTAAC
CCCACAGTGCCACATTGCTCGTTGGCCACGCTTATTGGACTCTGTATACG
CGTGAAAGTAGAACGCGGACTTCCGCACAACATAAAGCTAGACATATACA
TCAAGAAGGGAGCGCATCAAACCGAGGAAGAGATTAACAAGCAAATCAAT
GACAAGGAGCGCATCGCTGCGGCCATGGAGAACCCCAATCTGAGGGATTT
GGTCGAGAACTGCATCAAGGATGAGGAGGCAAGCTTTCTAGACCAT
FMO04539.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:47:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG30152-RC | 1473 | CG30152-RC | 698..1353 | 23..678 | 3280 | 100 | Plus |
| CG30152-RB | 1895 | CG30152-RB | 179..834 | 23..678 | 3280 | 100 | Plus |
| CG30152-RA | 954 | CG30152-RA | 179..834 | 23..678 | 3280 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:47:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 20671382..20671678 | 23..319 | 1485 | 100 | Plus |
| 2R | 25286936 | 2R | 20672119..20672273 | 433..587 | 760 | 99.4 | Plus |
| 2R | 25286936 | 2R | 20671745..20671860 | 319..434 | 580 | 100 | Plus |
| 2R | 25286936 | 2R | 20672340..20672434 | 584..678 | 475 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 19:47:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dmer\R1A3 | 3772 | Dmer\R1A3 MERCR1A3 3772bp | 660..724 | 196..133 | 151 | 72.3 | Minus |
| Dmer\R1A3 | 3772 | Dmer\R1A3 MERCR1A3 3772bp | 631..693 | 177..115 | 125 | 70.3 | Minus |
FMO04539.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:45:11 Download gff for
FMO04539.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30152-RA | 175..843 | 17..689 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-30 14:43:51 Download gff for
FMO04539.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30152-RA | 176..844 | 17..689 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:20:12 Download gff for
FMO04539.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30152-RA | 175..843 | 17..689 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:20:12 Download gff for
FMO04539.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 20672119..20672269 | 433..583 | 100 | -> | Plus |
| 2R | 20672340..20672443 | 584..689 | 96 | | Plus |
| 2R | 20671378..20671678 | 17..319 | 99 | -> | Plus |
| 2R | 20671746..20671858 | 320..432 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:45:11 Download gff for
FMO04539.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 16558883..16559183 | 17..319 | 99 | -> | Plus |
| arm_2R | 16559251..16559363 | 320..432 | 100 | -> | Plus |
| arm_2R | 16559624..16559774 | 433..583 | 100 | -> | Plus |
| arm_2R | 16559845..16559948 | 584..689 | 96 | | Plus |
