FMO04540.5prime Sequence
573 bp (256 high quality bases) assembled on 2008-08-04
> FMO04540.5prime
CACGTACATCTTCGCCGTGCTGGAGGGGCATGTGGTGCCCACGGTTCCCT
ACATCATCGATGCGGCCACCTACTCGCCGGAAAGCTGTGTGTTCGGGCAG
CTTATCAACATAGGCAGCGTTCTGCTTGGAATTACCATCTACGTACGCTA
CCGTCAGGTGCTGCAGCTTTATGAACACCATCCGGATTTGGACGGGTCGG
TGCTGCGCCAGAACCGACTAGCCTTGTGGTTCGGACTGGTGTCCTGCCTG
GGCATTAGCTTCGTGGGCAACTTTCAGGAAACGAACGTGCGGATTGTCCA
CTTCATCGGAGCCTTCTGCTGCTTCGGCTGCGGCACCTTGTACTTTTGGA
TGCAGGCGCTCATCTCGTATCTGATCTTCCCCATGTCGGGTACCCGCATT
AACGCTCACTTGCGGCTGGGCATGTCCGATGTCTGCACGATCCTGTTCAT
CCTGCTGACGGACACCGGCGTGATGTCCCACATCCTCTTCAAAGGACAGA
ATCCTCTAAAGTGGTATCCCTCGGACGGCGGCTGGTACTTCCACGTGCTC
AGCTCTATTTTCAGAGTGGGGTC
FMO04540.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:16:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4025-RA | 1240 | CG4025-RA | 180..748 | 1..570 | 2705 | 98.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:15:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 2077452..2077841 | 126..515 | 1860 | 98.5 | Plus |
| X | 23542271 | X | 2077218..2077339 | 4..125 | 595 | 99.2 | Plus |
| X | 23542271 | X | 2077907..2077954 | 513..560 | 225 | 97.9 | Plus |
Blast to na_te.dros performed on 2014-11-28 21:15:59 has no hits.
FMO04540.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:01:38 Download gff for
FMO04540.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4025-RA | 180..750 | 1..573 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-04 11:01:10 Download gff for
FMO04540.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4025-RA | 164..734 | 1..573 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:47:11 Download gff for
FMO04540.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4025-RA | 180..750 | 1..573 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:47:11 Download gff for
FMO04540.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 2077215..2077339 | 1..125 | 98 | -> | Plus |
| X | 2077452..2077839 | 126..513 | 98 | -> | Plus |
| X | 2077908..2077965 | 514..573 | 95 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:01:38 Download gff for
FMO04540.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 1971248..1971372 | 1..125 | 98 | -> | Plus |
| arm_X | 1971485..1971872 | 126..513 | 98 | -> | Plus |
| arm_X | 1971941..1971998 | 514..573 | 95 | | Plus |
