FMO04541.5prime Sequence
1171 bp (934 high quality bases) assembled on 2008-08-04
> FMO04541.5prime
CATTATACGAAGTTATCAGTCGACATGAAGACTTTCGTAGCCATTAGCCT
GGTGTTATGCACCCTGGTGGCCACCTCCTTGGCTGCTTCCATAGACATGC
CCGAGATCCATAATCAGTTCCAGCTGGTGGGAGGATCGGTGAGCACAGCA
AAAACCCGCGAAGGAAACCTTATCGACCCAAATGCCATGGCCAAGGGAAA
ACCCGGACCAGAGGAGGAGAAGAACGCGCAGTTCTGGTACGATCTTGCCT
ACGAGGAGATCGCCAAGCGCCTGGAACAGCCACAATTGGACAAGAGGAAG
GCCAAGAATGTTATCCTGTTCCTCGGCGATGGCATGTCCCTGTCCACGGT
GGCAGCCGCCCGCATCCACAAGGGTCAGCTTAAGGGCAATACCGGCGAGG
AGGACTCCCTGAGCTTCGAGAAGTTCCCCTACACCGGCCTGAGCAGGACA
TACTGCTCCAATGCCCAGGTTCCCGACTCCGCCTGCACTGCCACCGCTTA
CTTGTGCGGTGTGAAGACTAATATCGTGGCTTTGGGAATTACGGCGGCAG
TGAGCTTCAACAACTGCAGCGGCAGCGAGGATCCGGCCAATCAGGTGGAC
TCCATCGCAGCCTGGCCCAGGCTGCTGGAAGGCCACTGGCATTGTGACCA
CCACCACTCTGACCCACGCCAGTCCATCAGGTGCATATGCCAAGACCACC
AACCGATTCTTCGAGAGCGACACGGATATTCTGACCTACGGCGAGGGACA
GAACGATCCGGCCACCTGCACGGACATTGCCACCCAACTGATTACCCAGG
CTCCCGGCAAGAACTTCGATGTGATGCTGGGCGGCGGATTGGCAAGTTCC
TGCCCAACACGATCACGGATCCGTTCAACAGAACGGCGAGCGTTCCGACG
GAGTAATCCTGCTGTCTCGCTGGCAGGGACTGCATCCCGGCGGTGTTTAG
CTACATCGGTACCAGCTGCTGAACGTGAATGTCTCGAAGATCACACTGAT
TGTACCTTCCGCTCGGAGTGATGACTTCATAAAAATGGCGATCCAAGAGG
AGCCCACCTGGCCGGAATTGACGCGCAAGCATCGAGGGTGTCAACAAGCA
ATGGGGCTACATTCTGTTCCAGGGTGAACTTACCGATATGGCCATTCACG
TTCCCTACTATTGCCTCTCCT
FMO04541.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:16:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3292-RA | 1713 | CG3292-RA | 44..1159 | 25..1119 | 4820 | 96.7 | Plus |
| CG3264-RB | 2182 | CG3264-RB | 297..926 | 297..931 | 865 | 77 | Plus |
| CG3264-RA | 1737 | CG3264-RA | 297..926 | 297..931 | 865 | 77 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:16:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 22204452..22205006 | 994..447 | 2355 | 97.5 | Minus |
| 2R | 25286936 | 2R | 22205070..22205419 | 447..98 | 1750 | 100 | Minus |
| 2R | 25286936 | 2R | 22209975..22210257 | 727..447 | 475 | 79.5 | Minus |
| 2R | 25286936 | 2R | 22207006..22207410 | 857..447 | 370 | 74.9 | Minus |
| 2R | 25286936 | 2R | 22205478..22205550 | 97..25 | 365 | 100 | Minus |
| 2R | 25286936 | 2R | 22210319..22210469 | 447..297 | 260 | 78.1 | Minus |
| 2R | 25286936 | 2R | 22209852..22209946 | 858..765 | 200 | 83.2 | Minus |
| X | 23542271 | X | 15588110..15588204 | 424..518 | 190 | 80 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:16:53 has no hits.
FMO04541.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:30:23 Download gff for
FMO04541.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3292-RA | 44..1071 | 25..1039 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-04 11:01:11 Download gff for
FMO04541.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3292-RA | 27..1054 | 25..1039 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:57:30 Download gff for
FMO04541.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3292-RA | 44..1071 | 25..1039 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:57:30 Download gff for
FMO04541.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 22204401..22205005 | 448..1039 | 96 | <- | Minus |
| 2R | 22205070..22205419 | 98..447 | 100 | <- | Minus |
| 2R | 22205478..22205550 | 25..97 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:30:23 Download gff for
FMO04541.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 18091906..18092510 | 448..1039 | 96 | <- | Minus |
| arm_2R | 18092575..18092924 | 98..447 | 100 | <- | Minus |
| arm_2R | 18092983..18093055 | 25..97 | 100 | | Minus |
