Clone FMO04542 Report

Search the DGRC for FMO04542

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:45
Well:42
Vector:pMK33-CFH-BD
Associated Gene/TranscriptAg5r2-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO04542.5prime Sequence

498 bp (497 high quality bases) assembled on 2008-08-04

> FMO04542.5prime
ATCGTTTCCTTGGCCCTGGCCCAGGCCACCGACTATTGTTCGTCGGACAT
CTGCAACGGTGGCTCCCACATCGCCTGTGGGCATAGCAACTGGTGGGACA
GTAGCTGTCCCGGCGATGCCGAGCTGATCGACATCAACGATGACTACAAG
TGGGTCTTTGTCCACTCGCACAACGACAAGAGGAACTACATTGCCGGTGG
CTACGATTCCAATCACAATGCCGCCTGCCGTATGGCCACCATGGAGTGGG
ACGATGAGCTGGCCTATCTGGCCTCCCTGAATGTGCGCCAGTGCAACATG
GTGCACGATAGCTGCCACAACACCGACGCCTTCAAGTACTCCGGCCAGAA
TCTGGCATGGCAGGCCTACTCCGGCGACCTGCCCGACATGGGCTACATCC
TGGACAACAGCGTGCAGATGTGGTTCGATGAGGTGCACAACTCCAACGCC
GGTATTATTGCCGGCGGATACCCATCCGGATATAACGGACCCTGCCAT

FMO04542.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:16:23
Subject Length Description Subject Range Query Range Score Percent Strand
Ag5r2-RA 849 CG9540-RA 74..570 1..498 2465 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:16:21
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 14783489..14783979 491..1 2455 100 Minus
Blast to na_te.dros performed on 2014-11-28 20:16:22 has no hits.

FMO04542.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:30:11 Download gff for FMO04542.5prime
Subject Subject Range Query Range Percent Splice Strand
Ag5r2-RA 74..570 1..498 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-04 10:58:03 Download gff for FMO04542.5prime
Subject Subject Range Query Range Percent Splice Strand
Ag5r2-RA 64..560 1..498 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:57:08 Download gff for FMO04542.5prime
Subject Subject Range Query Range Percent Splice Strand
Ag5r2-RA 74..570 1..498 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:57:08 Download gff for FMO04542.5prime
Subject Subject Range Query Range Percent Splice Strand
X 14783489..14783979 1..491 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:30:11 Download gff for FMO04542.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 14677522..14678012 1..491 100   Minus