FMO04543.5prime Sequence
878 bp (437 high quality bases) assembled on 2008-07-30
> FMO04543.5prime
TATACGAAGTTATCAATCCACATGTGCTCTCCGTGCGGTCCTTGTAGTCC
ATGCGATCCCTGCTGCGGTCCCTTCGAGTGCTCACCCAAGTGCTACAATG
CCGCCCAATTGGAGGCCTTGCCACAATGTGCTCCACGTATTCCACCACCC
TTCCCCAAATGCATCACCGTGCACCAACCACCACGCATGATCTGCAAGAA
ACGCGTTGTGTTCACGGAAAAGATTGTGCCGGAGCCAATGGTGGTTAACC
GATGCAGGCAGATCACCATTCCAAAGGTCGTTGATGCCACGCGGGTGATC
AAGGTGCCCAAGCTGATTTGGGTGTCGAAGATGGTGCGAGAACCCACAGA
AATCTACTACCCCTCGATGATCCCCGACCCCTATGTGGTGTGCTATCCCA
AGCGCGTCTGCAAACCACTTGAGGTGTGTCAGTCCATCCTCTGCCGGCCC
AAGCCCCTGACCATCGACATTCCGCCGCCGAGGGAGTACTGCTGCTATCC
AAATGGACCCATCAACTACAAGCCCAGTGCAGCGTGCCCACCCTGCCCCA
TTGGACCATGTGCTCCTGGAGGACCCTGCTGTCCGCTGCCCTGCTTCTCC
ACAAACCAATACCCAGTGGCTGAGGGCAGATGCAGACCATGTGGACCCTG
TGGACCCCGGATGCGGACCTTGCGGACCCTGCTGACCTTGGGGACCAGTA
TGCTGTCCTTGCGGACTCTGTGGACCCTGCGGACCCTTCTGACCAGGCTG
TGGTCCATGCAGACCGTGTGTACCCTTGCGGACCTGGCCCTTGTGGCATC
AGACCTTGCGTACCATGCGCAAGCATTGCTAGACCATTGCGTATGGCGCG
CGTGCCCCAAGCAAGTCGATCATCATCT
FMO04543.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:01:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Mst98Cb-RA | 1066 | CG18396-RA | 118..912 | 22..818 | 3575 | 96.7 | Plus |
| Mst98Ca-RA | 1319 | CG11719-RA | 120..774 | 20..675 | 2715 | 94.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:01:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 28292915..28293709 | 22..818 | 3525 | 96.7 | Plus |
| 3R | 32079331 | 3R | 28291457..28292111 | 20..675 | 2690 | 94.4 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:01:24 has no hits.
FMO04543.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:53:24 Download gff for
FMO04543.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mst98Cb-RA | 118..912 | 22..818 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-30 14:43:54 Download gff for
FMO04543.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mst98Cb-RA | 113..907 | 22..818 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:39:59 Download gff for
FMO04543.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mst98Cb-RA | 118..912 | 22..818 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:39:59 Download gff for
FMO04543.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 28292915..28293709 | 22..818 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:53:24 Download gff for
FMO04543.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 24118637..24119431 | 22..818 | 96 | | Plus |
