FMO04544.5prime Sequence
565 bp (565 high quality bases) assembled on 2008-08-04
> FMO04544.5prime
ATACATTTTTACGAAGTTATCAGTCGACATGTCGAAAATTACTCTCATTT
TTGCTATTCTCTGCCTTTGCGTGGCTGTTCAGGCTCAAACTCGTGAACAA
GAAATTTGCCGTCAAGAAAACGAAACTTGCCGTCGAAATGAACGGAGATT
GGGAGTTCAAAATGATGTTTCGACCACATTTAATAATCACTGCCGCCGCC
AGTCAGGCATTCGAAACTGGCGAAATGTCTCTCGTTGCGAATTGTCTCTG
GCTACTTGTCGATTGACACTCGAGCGTTGTGCTGTTATAAACTGCAAAAA
TGTGAGAAACAGCATTGATGGTGGGGTCACCGCTCGCCCTCCAACTTCAA
GGAGGACAACCCGGCGAATTCCTGACACCCGACGACCTCGAACTACTCGT
AGGACCCCAACTACCCGTCGTGCTCCAACTACTAGATCTTCTCGTAGAAC
TACACGTCGTCGTGCTCCAACAACTAGAACTACTCGAAGAACTACACGTC
GTCGTGCGCCAACTACTAGAACTACGACTCGTCGACCTACTGAAGAAGCA
AGCTTTCTAGACCAT
FMO04544.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:17:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Eig71Ec-RA | 639 | CG7608-RA | 38..558 | 27..547 | 2605 | 100 | Plus |
| Eig71Ec-RA | 639 | CG7608-RA | 427..494 | 458..525 | 250 | 91.2 | Plus |
| Eig71Ec-RA | 639 | CG7608-RA | 469..536 | 416..483 | 250 | 91.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:17:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 15651560..15651843 | 547..264 | 1420 | 100 | Minus |
| 3L | 28110227 | 3L | 15651922..15652138 | 263..47 | 1070 | 99.5 | Minus |
| 3L | 28110227 | 3L | 15651582..15651649 | 483..416 | 250 | 91.2 | Minus |
| 3L | 28110227 | 3L | 15651624..15651691 | 525..458 | 250 | 91.2 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:17:38 has no hits.
FMO04544.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:57:43 Download gff for
FMO04544.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Eig71Ec-RA | 27..569 | 18..561 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-04 10:58:05 Download gff for
FMO04544.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Eig71Ec-RA | 24..566 | 18..561 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:55:05 Download gff for
FMO04544.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Eig71Ec-RA | 27..569 | 18..561 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:55:05 Download gff for
FMO04544.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 15651549..15651843 | 264..561 | 98 | <- | Minus |
| 3L | 15651922..15652131 | 54..263 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:57:43 Download gff for
FMO04544.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 15644649..15644943 | 264..561 | 98 | <- | Minus |
| arm_3L | 15645022..15645231 | 54..263 | 100 | <- | Minus |
