FMO04546.5prime Sequence
583 bp (583 high quality bases) assembled on 2008-08-04
> FMO04546.5prime
ACATTATACGAAGTTATCAGTCGACATGTACAAACTTGTCTGTGTAGTTT
TGGCCCTGTTTGCAGTTGCCTACGCGGTTCCCTCGACTTATGATACCGAG
CACGTGTGGAAGGCTGGTAACCTGTCCTACGTTATTCCCTATAATGCCGT
TGTGGGTGGCTTCGATCCCTACGGATTTACCACCTATGTTGGTCGTGTTA
AGTACTCCAATAGCATCCTGCCGGCTCGAGTTGTTGCGGAAACTGGTACT
GCTTACTTCAATACGGAAACCACATCCTCGAAGCTCCTCGTCTACGACAT
CCTAGTGGCTGAGCGGGATGTAAATTACGTGTGGGTCAGGAGCTTCGATG
GATTCTATGAAATGGGAGCCGTTGCCGTGGGCACGACGGTCAAAAATGAG
CGGGTGTTCTGCTGCCGTGCTAAGACCGATGGAGGCATCCTAATCGGCAC
CCTGCTCCTTAGCAGCCAGAAGGTGTGCATCATCAAGCACGAGAGCTTGG
CCCTGCGAAAGTTCGACAAATATGAAGTTCTGGTGGCCCAGCCTAAAGGC
AATGGAACATACTACGCAAGCTTTCTAGACCAT
FMO04546.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:17:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5506-RA | 661 | CG5506-RA | 32..571 | 26..565 | 2685 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:17:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 17883739..17884212 | 565..92 | 2355 | 99.8 | Minus |
| 3L | 28110227 | 3L | 17884279..17884345 | 92..26 | 335 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:17:31 has no hits.
FMO04546.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:57:38 Download gff for
FMO04546.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5506-RA | 23..577 | 17..573 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-04 10:58:01 Download gff for
FMO04546.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5506-RA | 7..561 | 17..573 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:55:02 Download gff for
FMO04546.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5506-RA | 23..577 | 17..573 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:55:02 Download gff for
FMO04546.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 17883733..17884211 | 93..573 | 98 | <- | Minus |
| 3L | 17884279..17884354 | 17..92 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:57:38 Download gff for
FMO04546.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 17876833..17877311 | 93..573 | 98 | <- | Minus |
| arm_3L | 17877379..17877454 | 17..92 | 96 | | Minus |
