FMO04549.5prime Sequence
645 bp (422 high quality bases) assembled on 2008-08-04
> FMO04549.5prime
TCGTATAGCATACATTATACGAAGTTATCAGTCGACATGCTGCGTCGTCG
CCCGAGCCTAATGGAATATCCGGCTTCCAACGGATTCCTGCCACTTGCCA
ATGCCATTATTCAGGGGGAGATGTGCATCATTGACTTGCTGCTCTCGGCC
GGTTGCAACGTCCACATTGGAGATCCGGGAAGCGGCCGGACCCCGCTGCA
CCTGGCTTTTTACTACGGTCACCTGCCGTCCGCTCGCATTCTGCTGAACA
AGAAGGCCCGCCTGGAGGCGACGGACAGTAACGGCATGACTCCCGCCCAC
TGCGCCGTTGATGCCAATCAACTGGAAATAGTCAAGTTCGCTCTCGAAGC
GGGAGCGAATGCTGAGGCCAGAGACGTCTGCGGCTGGACCCTTCTTATGC
GCGCAGTGGTTATGAACGCTAGCATGGAGCTCATCAAAGTCCTTGTTACG
CACGGCGCAGACTTGGCGGCTTTGGATGGTGTTGGCAAAACTTGCACTGA
CTTGGCGAAACTTTATCACAGACAGGAGGCAAAGGATTACTTTGACGAGG
TGCAAAAATTTAAGCTGGAGAAATCAGTCGCGACCGCAGACGCAGTGACT
GCAATAACGAGGTACACCAAAGAAGTTGCAAGCTTTCTAGACCAT
FMO04549.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:17:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9766-RC | 1502 | CG9766-RC | 565..1155 | 37..627 | 2895 | 99.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:17:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 4269568..4269792 | 627..403 | 1095 | 99.1 | Minus |
| 3R | 32079331 | 3R | 4269848..4270052 | 406..202 | 1025 | 100 | Minus |
| 3R | 32079331 | 3R | 4270109..4270273 | 201..37 | 795 | 98.8 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:17:50 has no hits.
FMO04549.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:57:48 Download gff for
FMO04549.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9766-RB | 245..837 | 34..627 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-04 10:59:35 Download gff for
FMO04549.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9766-RC | 428..1020 | 34..627 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:55:11 Download gff for
FMO04549.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9766-RC | 563..1155 | 34..627 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:55:11 Download gff for
FMO04549.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 4270109..4270275 | 34..201 | 98 | | Minus |
| 3R | 4269568..4269788 | 407..627 | 99 | <- | Minus |
| 3R | 4269848..4270052 | 202..406 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:57:48 Download gff for
FMO04549.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 95831..95997 | 34..201 | 98 | | Minus |
| arm_3R | 95290..95510 | 407..627 | 99 | <- | Minus |
| arm_3R | 95570..95774 | 202..406 | 100 | <- | Minus |
