FMO04550.5prime Sequence
743 bp (743 high quality bases) assembled on 2008-08-04
> FMO04550.5prime
AACTTCGTATAGCATACCTTATACGAAGTTATCAGTCGACATGGATTGCG
GCGGCGTTTTTGTGAAATATGTGCTGTTCATATTCAACATACTGTTTGTG
ATATGCGGCATTTTGCTTATCACCTTCGGCTCTATCATGGTGTCCACCAT
AAAGGACTTCTCGGGCGTCGGCGAGACCTTCACGGCCAACAGCGTGGCCA
TCATCATCCTGGTCCTTGGCTGCGTAGTCTTCCTGGTAGCCTTCATGGGA
TGCTGCGGCGCCATACGCGAGAATTCCTGTGCTCTGACCTCGTACTCTGT
GGTCATGCTGGTGCTGCTGGTTAGTCAGCTAGCTCTCATTATCTACGTGT
GGGTGGACCATGTGCAGATACAGCAATCTTTGGAGAAGATCGTCCAGACC
ATATGGGATCAACGCAAGACCGATGCCCTCCTCATGGACACACTGCAGCG
ATCGTTCAAGTGCTGCGGCTTGAACGGCTTCGCTGATTACGGCATTACGT
ATCCCGCCTCCTGCTGCGACTCGCCCTCCAATGGAACCTGCGCACTAACC
CAAGTCATGACGCGATCCAGTTGCCTGAAGGCCGTTGATTCCTTCTGGGA
CACCAACGTGAGCATCATCAAGTACGCTGGCCTGGGTGTGACTGCTGTTG
AGCTTGTGGCCTTCATTTTCGCCTGCTGCCTGGCCAATCAGACCCGCAAC
TCGCAGAGACGCCAGAACTACGCAAGCTTTCTAGACCATTCGT
FMO04550.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:13:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Tsp42Ed-RB | 1248 | CG12846-RB | 89..769 | 41..721 | 3345 | 99.4 | Plus |
| Tsp42Ed-RA | 886 | CG12846-RA | 89..769 | 41..721 | 3345 | 99.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:12:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 7010103..7010301 | 652..454 | 995 | 100 | Minus |
| 2R | 25286936 | 2R | 7010663..7010855 | 292..100 | 920 | 98.4 | Minus |
| 2R | 25286936 | 2R | 7010432..7010594 | 454..292 | 800 | 99.4 | Minus |
| 2R | 25286936 | 2R | 7009977..7010047 | 721..651 | 355 | 100 | Minus |
| 2R | 25286936 | 2R | 7011592..7011651 | 100..41 | 300 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:12:59 has no hits.
FMO04550.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:36:12 Download gff for
FMO04550.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tsp42Ed-RA | 83..772 | 32..725 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-04 11:02:52 Download gff for
FMO04550.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tsp42Ed-RA | 198..887 | 32..725 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:51:16 Download gff for
FMO04550.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tsp42Ed-RA | 83..772 | 32..725 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:51:16 Download gff for
FMO04550.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 7009973..7010045 | 653..725 | 97 | <- | Minus |
| 2R | 7010103..7010300 | 455..652 | 100 | <- | Minus |
| 2R | 7010432..7010593 | 293..454 | 99 | <- | Minus |
| 2R | 7010663..7010854 | 101..292 | 98 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:36:12 Download gff for
FMO04550.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 2897478..2897550 | 653..725 | 97 | <- | Minus |
| arm_2R | 2897608..2897805 | 455..652 | 100 | <- | Minus |
| arm_2R | 2897937..2898098 | 293..454 | 99 | <- | Minus |
| arm_2R | 2898168..2898359 | 101..292 | 98 | <- | Minus |
