FMO04552.5prime Sequence
980 bp (952 high quality bases) assembled on 2008-08-04
> FMO04552.5prime
TATAGCATACATTATACGAAGTTATCAGTCGACATGTTCGATTTCAATTT
GGAATTTGCGCGTGGAGGTGCCCGTTTCACCAGCGAACTTTTTCAGCTTT
TGAGCGCTGGCGGGCTCAAGGAGAACGTCGTCTTCTCGCCCTTCTCCATC
CAAACTTGCATTGCCCTGGCCTTTGCCGGATCGCAGGGTGAAACCGCCGA
CGAGATCGCCAAGGCACTGCACTTCGTCTCCAACTTTCCGCCGGAGGTGG
CCCAAACGTTCCAGTTTGTGCTGGAGAAGTACCGCAACAGTAACCTGCTG
CGCGTTGCCAACAAGCTGTACGTGCAGGAGGGCAAGCAGCTGAAGCCCGC
CTACCAGTCGGCCATCAAGGAGCAGTATCATTCGGAGGCGGAGTCCATTA
ACTTTGCGCTCAACGATGCCGCCGCCCAGGCCATCAATGCCTGGGTGAAT
GCCAAGACTCAGGGCAAGATTACGGAGCTGGTCAGCGCGGACTCGTTCTC
GGACAACACCAGGCTGGTCCTGCTCAATGCCCTCCACTTCAAGGGCAGCT
GGGCGCACAAGTTCAGCGAGGAGCGCACCGAGGAGGATATCTTCTGGGTG
GGCGAGGAGGAGCAAGTTAAAATCAACTACATGAATCCAGAAGGCCAAGT
TCAACTATGGCTTCTTCGAAGATCTGGGCTGCACTGCCCTGGAGATGCCC
TACCAGGACTCTGACCTCTCCATGTTCGTGCTGCTGCCGCAGGAGCGGAC
AGGTATTTACGCCCTAGCCGAGAAGCTCAAGACTGTGAACCCTGGTGGAT
TTGGCCGACAAGTTGACCGTGAAAGAAGTCCATGTCAAGTTCCCCAAGTT
TAACGTGGACTACCTCCTGGAATTGGCCGAGAAACTGAAGCACCTGGGCA
TCACGAAATGTTTACGGACAAGCTGAGTTTAGCAATCTGCTGGAATCCCC
CGATGGCGTCTTTTGGTCCAAGGTTGCTTG
FMO04552.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:25:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Spn55B-RA | 1297 | CG10913-RA | 94..1034 | 34..974 | 4465 | 98.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:25:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 18126440..18127296 | 34..892 | 4105 | 99.1 | Plus |
| 2R | 25286936 | 2R | 18127865..18127947 | 894..974 | 270 | 94 | Plus |
Blast to na_te.dros performed on 2014-11-28 23:25:19 has no hits.
FMO04552.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:22:45 Download gff for
FMO04552.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Spn55B-RA | 78..1038 | 20..980 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-04 10:59:36 Download gff for
FMO04552.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Spn6-RA | 120..1080 | 20..980 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:11:24 Download gff for
FMO04552.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Spn55B-RA | 78..1038 | 20..980 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:11:24 Download gff for
FMO04552.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 18126424..18127297 | 20..893 | 98 | -> | Plus |
| 2R | 18127865..18127951 | 894..980 | 92 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:22:45 Download gff for
FMO04552.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 14013929..14014802 | 20..893 | 98 | -> | Plus |
| arm_2R | 14015370..14015456 | 894..980 | 92 | | Plus |
