FMO04553.5prime Sequence
1006 bp (889 high quality bases) assembled on 2008-08-04
> FMO04553.5prime
ATACATTATACGAAGTTATCAGTCGACATGACGAGTTTCGAGTTTGCACT
GCTGCCGCTTCTGTTTTTGCCACTGATCCTGGAAAACCCGCTAACCTCCG
CCCAAATGATGTCATCGCTGGTGAAGCCGGGCATTTTCCGGCACCTAATG
TGCCGCAACAACATGTATCCGCGCAGCTCAGTCCTCCGGTACCCAGTTTC
CGACGAACAGGTCTTCTGGTCGGAGCCGTTCCCGGACTACTGCCCGCCTG
CGTACACGGCGCCACATATTGGCGGGCAGGTGTGGGCTGATCCGCCGTTG
CCCAGCGACACATTCTGGCCACAGTGGAATCAGCTGGATGGACAGGTAAA
CCGCGAATCCTTTCACGGTGCCTACAACGTGCAGAATGGACTGCCCCTAA
ATCCGATCGGGCGTACCGGACTAACCGGACGTGGTTCGCTAGGCAGATGG
GGTCCAAATCATGCCGCAGATCCAATCGTCACGCGCTGGAAGCGTGACGA
CCAAGGAGCAATTGTGGCCAACCCGACAACCGGCAAGAATATCATACAGA
TGGTTGCCATACAGCGGTCCGACAACAAGTTGTGGGCCATTCCCGGTGGA
ATGGTCGATCCCGGCGAGAATGTCAGTGTCACCCTTAAGCGGGAGTTCAC
CGAGGAGGCATTGAATTTCACGGACAAAGCCAACATGGTTGAGCGATTTT
TTCAAGCGGGGAGGCGTTCAGGTATACCAAGGCTACGTAAACGATTTTCG
AAACACGGACAACGCTTGGATGGAAACCACTGCGCTGAACTTTCACGATG
AGACGGGAGCCAGGTGGGACAATTGTAGCTAATGGTCGGTGACGATGCCT
CCAATGTGCGCTGGACGGACGTCACTCAATCTCAGCTGCACTGCAATCAT
GCCGACATGTCGTGAAGGTTGTCATTCGGACGAAATGCACAACTGGGCAA
GCTTTCTTAGACCAATCGTTGGCCCCGCGGACCCAGGTTAAGTTGGTCAT
TAATCT
FMO04553.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:13:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4098-RA | 1154 | CG4098-RA | 133..1057 | 19..941 | 4275 | 98.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:13:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 16608698..16609207 | 537..28 | 2550 | 100 | Minus |
| 3L | 28110227 | 3L | 16600581..16600959 | 908..533 | 1545 | 96.8 | Minus |
| 3L | 28110227 | 3L | 16608268..16608646 | 908..533 | 1545 | 96.8 | Minus |
| 3L | 28110227 | 3L | 16601007..16601092 | 537..452 | 400 | 97.7 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:13:06 has no hits.
FMO04553.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:36:14 Download gff for
FMO04553.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4098-RA | 129..1061 | 12..946 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-04 11:02:54 Download gff for
FMO04553.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4098-RA | 1..934 | 14..946 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:51:20 Download gff for
FMO04553.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4098-RA | 129..1061 | 12..946 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:51:20 Download gff for
FMO04553.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 16608291..16608642 | 537..885 | 97 | <- | Minus |
| 3L | 16608699..16609219 | 12..536 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:36:14 Download gff for
FMO04553.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 16601391..16601742 | 537..885 | 97 | <- | Minus |
| arm_3L | 16601799..16602319 | 12..536 | 99 | | Minus |
