FMO04554.5prime Sequence
1012 bp (982 high quality bases) assembled on 2008-08-04
> FMO04554.5prime
TATAGCATACATTTTACGAAGTTATCAGTCGACATGTCGAGCAGTGCAAC
CATCGCAACGCCGCTGCCGCAGCCGCAGCACCAGCAATTCGCCCTGCTGC
CGAAGATCATTAACGGCGGAATTGCGGGAATCATCGGAGTGACATGCGTC
TTCCCACTGGACTTGGTCAAGACGAGGCTGCAAAACCAGCAGATCGGACC
CAATGGCGAACGCATGTACAACAGCATGTTCGATTGCTTCCGCAAGACGT
ACAAGGCCGAAGGATACTTTGGCATGTACCGCGGCTCTGGCGTGAACATC
CTGCTAATCACACCTGAGAAGGCCATCAAGTTGACCGCCAACGATTACTT
CCGCCACAAGCTGACCACCAAGGATGGCAAACTTCCGCTGACCAGTCAGA
TGGTTGCCGGCGGTCTGGCCGGTGCATTCCAAATTATCGTCACCACGCCC
ATGGAGCTTCTCAAGATCCAGATGCAGGATGCGGGTCGCGTGGCGGCGGC
GGCCAAATTGGCTGGAAAGACGGTGGAGAAGGTGTCGGCCACCCAATTGG
CTTCCCAGCTTATCAAGGACAAGGGCATCTTTGGCCTGTACAAGGGTATC
GGTGCCACAGGACTGCGAGATGTCACCTTCTCTATCATTTACTTCCCCCT
TTTCGCTACTCTCAATGACCTGAGTCCACGACGAAACGATGGATCTGGCG
AGGCTGTGTTCTGGTGCTCCTTCCTGGCGGGCTTGGCGGCCGGGTTCACC
GCTGCCCTCGCAGTTAATCCCTTCGACGTGGTCAAGACGCGTCTGCAGGC
GATTAAGAAGGCCGACGGTGAGAAGGAGTTCAAGGGCATATCAGATTGTA
TCACTAAGACACTGAAGCACGAGGACCCACCGCCTTCTTCAAGGGCGGGC
TGTGCCGAATGATTGTGATTGCTCCTCTGTTCGGAATCGCTCAACGTCTA
CTTATCTGGGCGTGACCGAGGGCCTGCTGGGCTTATCGAAAAAGGCAAGC
TTTCCTAGACAT
FMO04554.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:07:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| GC1-RB | 1658 | CG18347-RB | 182..1144 | 34..994 | 4585 | 98.8 | Plus |
| GC1-RA | 1450 | CG18347-RA | 182..1144 | 34..994 | 4585 | 98.8 | Plus |
| Tango9-RB | 3673 | CG10007-RB | 3508..3649 | 994..855 | 540 | 94.4 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:07:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 11970288..11970775 | 228..715 | 2410 | 99.6 | Plus |
| 3R | 32079331 | 3R | 11970095..11970231 | 93..229 | 685 | 100 | Plus |
| 3R | 32079331 | 3R | 11970833..11970974 | 713..854 | 680 | 98.6 | Plus |
| 3R | 32079331 | 3R | 11971031..11971161 | 855..983 | 450 | 94.7 | Plus |
| 3R | 32079331 | 3R | 11969218..11969276 | 34..92 | 295 | 100 | Plus |
| 3R | 32079331 | 3R | 11972130..11972366 | 258..494 | 285 | 74.7 | Plus |
| 3R | 32079331 | 3R | 11971901..11972030 | 100..229 | 245 | 79.2 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:07:23 has no hits.
FMO04554.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:44:34 Download gff for
FMO04554.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18347-RA | 173..1144 | 27..994 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-04 10:59:38 Download gff for
FMO04554.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18347-RA | 152..1123 | 27..994 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:59:36 Download gff for
FMO04554.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| GC1-RA | 173..1144 | 27..994 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:59:36 Download gff for
FMO04554.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 11970095..11970229 | 93..227 | 100 | -> | Plus |
| 3R | 11970288..11970773 | 228..713 | 99 | -> | Plus |
| 3R | 11970834..11970974 | 714..854 | 98 | -> | Plus |
| 3R | 11971031..11971172 | 855..994 | 94 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:44:34 Download gff for
FMO04554.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 7795817..7795951 | 93..227 | 100 | -> | Plus |
| arm_3R | 7796010..7796495 | 228..713 | 99 | -> | Plus |
| arm_3R | 7796556..7796696 | 714..854 | 98 | -> | Plus |
| arm_3R | 7796753..7796894 | 855..994 | 94 | | Plus |
