FMO04555.5prime Sequence
655 bp (655 high quality bases) assembled on 2008-08-04
> FMO04555.5prime
AGCATACATTATACGAAGTTATCAGTCGACATGAAGGTGTCCAAAGGTCT
GTTCCTGCTAAAACAGTTGCCAAATGTAAGAAACTCCAGCAGTGGGCCCA
CAAAGCCTTTCAAAATCCTCAACAAACATTTCGATGAAATCAGCATACCA
GTTCCATGGGGTCACATCTCGGGCAAATGGTATGGACCGAAGCACGTACG
ACCCATTGTTGGCATGCATGGCTGGCAGGATAATGCCGGTACCTTCGATA
CTTTGGCTCCTCTCCTGCCGTCCCACCTCTCTTTCCTAAGCATCGATGCA
CCAGGACATGGGTTGTCCTCCTGGCTGCCACCTGGCACTTCCTACCACTC
CATTGACCTCGTGCTGATCACTCGCCGACTAATGGAGGAGTACAACTGGG
ACAAGATCTCTATATTGGCCCACTCGATGAGCTCCATCAATGGCTTTGTG
TTCAGTGCTCTGTTTCCTGACAAAGTTGATCTGTTCGTGGGTCTGGATGT
GCTGAAGCCGCCAGTTCGAAGTGCTCGCGGCATTGTGGATTCGCTTACCG
AGCGAATTGAGTCCGCACTGAAGCTGGAACGACGTCTGAAGAGTGGGTCT
GAGCCGCCTGCCTATGACTGGGATCAGTTGGTAACCCGGCTGCACGAGGG
CTCAA
FMO04555.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:37:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7632-RA | 1442 | CG7632-RA | 225..849 | 31..655 | 3095 | 99.7 | Plus |
| CG7632-RB | 1388 | CG7632-RB | 268..795 | 128..655 | 2640 | 100 | Plus |
| CG7632-RB | 1388 | CG7632-RB | 225..269 | 31..75 | 210 | 97.8 | Plus |
| CG11309-RF | 2125 | CG11309-RF | 370..480 | 139..249 | 210 | 79.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:37:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 21305079..21305604 | 130..655 | 2630 | 100 | Plus |
| 3L | 28110227 | 3L | 21304921..21305019 | 31..129 | 465 | 98 | Plus |
| 3L | 28110227 | 3L | 21303430..21303540 | 249..139 | 210 | 79.3 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:37:17 has no hits.
FMO04555.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:35:07 Download gff for
FMO04555.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7632-RA | 222..847 | 28..653 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-04 10:59:39 Download gff for
FMO04555.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7632-RA | 202..827 | 28..653 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:21:47 Download gff for
FMO04555.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7632-RA | 222..847 | 28..653 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:21:47 Download gff for
FMO04555.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 21304918..21305019 | 28..129 | 97 | -> | Plus |
| 3L | 21305079..21305602 | 130..653 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:35:07 Download gff for
FMO04555.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 21298018..21298119 | 28..129 | 97 | -> | Plus |
| arm_3L | 21298179..21298702 | 130..653 | 100 | | Plus |
