FMO04557.5prime Sequence
540 bp (508 high quality bases) assembled on 2008-08-04
> FMO04557.5prime
TAGCATACATTATACGAAGTTATCAGTCCACATGGGTATTAGCCGCGATA
GTGCACACAAACGCCGGGCCACCGGAGGCAAGCGCAAGTCGCTCCGCAAG
AAGCGCAAGTTCGAGTTGGGACGCCCCGCCGCCAACACCAAGCTTGGCTC
CGGCCGCGTGCACAAGGTGCGCACCCGTGGTGGAAACACCAAGCTCCGTG
CTCTGCGCCTGGAAACCGGAAACTTCGCCTGGGCCTCCGAGGGAGTGGCG
CGCAAGACCCGTATCGCCGATGTTGTGTACAACGCCTCCAACAACGAGCT
GGTGCGAACCAAGACCTTGGTGAAGAACAGCATCGTGGTCATCGATGCCA
CGCCCTTCCGCCAGTGGTACGAGGCTCACTACGTGCTGCCCCTGGGACGC
AAGCGTAACCCCAAGCACGCCCAGAAGGAGGACGAGAACGACGTGCTGAC
CAAGAAGCGCATCGAATAGGTTATGAAGAAGTACCTGGAGCGCCAGAAGT
ACGGCAAGGTCGAGCAGGCCCTCGAGGATCAGTTCACCTC
FMO04557.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:25:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| RpS8-RG | 931 | CG7808-RG | 238..748 | 30..540 | 2510 | 99.4 | Plus |
| RpS8-RF | 726 | CG7808-RF | 33..543 | 30..540 | 2510 | 99.4 | Plus |
| RpS8-RE | 756 | CG7808-RE | 63..573 | 30..540 | 2510 | 99.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:25:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 29862783..29863182 | 141..540 | 1955 | 99.2 | Plus |
| 3R | 32079331 | 3R | 29862198..29862305 | 35..142 | 540 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 23:25:10 has no hits.
FMO04557.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:22:39 Download gff for
FMO04557.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpS8-RC | 33..543 | 30..540 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-04 10:58:09 Download gff for
FMO04557.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpS8-RC | 63..573 | 30..540 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:11:18 Download gff for
FMO04557.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpS8-RE | 63..573 | 30..540 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:11:18 Download gff for
FMO04557.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 29862196..29862305 | 31..142 | 98 | -> | Plus |
| 3R | 29862785..29863182 | 143..540 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:22:39 Download gff for
FMO04557.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 25687918..25688027 | 31..142 | 98 | -> | Plus |
| arm_3R | 25688507..25688904 | 143..540 | 99 | | Plus |
