Clone FMO04560 Report

Search the DGRC for FMO04560

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:45
Well:60
Vector:pMK33-CFH-BD
Associated Gene/TranscriptCG5569-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO04560.5prime Sequence

622 bp (622 high quality bases) assembled on 2008-08-04

> FMO04560.5prime
AACTTCGTATAGCATACATTATACGAAGTTATCAGTCGACATGATTGCGC
GCACCCTGCGAACGGTGGGCCGGCAAGGTCGCAACCTTCTGCTACCGCGC
ATCACCGCCTGTCGCCCACTTCACGCTATTCCGGCCAACTTCAGCAAGGC
CTACGACCACGACGGGAAGACCAAAGTCACCATCTTCAACACCGAAACGG
ATCTGGGCCTTATGGTCACCGGCTACAGCCAGTACGGCTTCCGGCTCAAC
AACGACATGGTCCTCATTGGCCCCATCTCCGTGTTTCCCAGATCGGTTCT
GTCCTGGAACGTCAACAGCTTTGAGGACATCAACGAGGACAGCCTCAGTC
TCTTCCCCACCCTGGAGCCAAAGATCGACGTGCTTATCATTGGCATTGGC
GACCAAGCACCGCCCCCAGCTCTTTCCAAGAGGATCATCGAGTTCATGAA
GAAGTACAAGATAAACGTAGAGATCCTGCGCACGGAGCAGGCATGTGCCA
CCTTCAACTTCCTGAATGCCGAGAACCGAATGGTGGCCTGCGCCCTGATA
CCCCCGCTGCACCTGTCCTACAACGAGAACGACATTCTGCAAGCGAAGCT
GCGGAAGATAAGAGAGTATTAT

FMO04560.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:16:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG5569-RA 774 CG5569-RA 109..677 40..608 2845 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:16:36
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 23865522..23865773 40..291 1260 100 Plus
2R 25286936 2R 23866184..23866386 289..491 1015 100 Plus
2R 25286936 2R 23866436..23866557 487..608 610 100 Plus
Blast to na_te.dros performed on 2014-11-28 20:16:37 has no hits.

FMO04560.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:30:17 Download gff for FMO04560.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5569-RA 105..682 34..614 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-04 10:59:34 Download gff for FMO04560.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5569-RA 98..675 34..614 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:57:21 Download gff for FMO04560.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5569-RA 105..682 34..614 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:57:21 Download gff for FMO04560.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 23865518..23865773 34..291 98 -> Plus
2R 23866187..23866385 292..490 100 -> Plus
2R 23866440..23866562 491..614 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:30:17 Download gff for FMO04560.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 19753041..19753296 34..291 98 -> Plus
arm_2R 19753710..19753908 292..490 100 -> Plus
arm_2R 19753963..19754085 491..614 98   Plus