FMO04560.5prime Sequence
622 bp (622 high quality bases) assembled on 2008-08-04
> FMO04560.5prime
AACTTCGTATAGCATACATTATACGAAGTTATCAGTCGACATGATTGCGC
GCACCCTGCGAACGGTGGGCCGGCAAGGTCGCAACCTTCTGCTACCGCGC
ATCACCGCCTGTCGCCCACTTCACGCTATTCCGGCCAACTTCAGCAAGGC
CTACGACCACGACGGGAAGACCAAAGTCACCATCTTCAACACCGAAACGG
ATCTGGGCCTTATGGTCACCGGCTACAGCCAGTACGGCTTCCGGCTCAAC
AACGACATGGTCCTCATTGGCCCCATCTCCGTGTTTCCCAGATCGGTTCT
GTCCTGGAACGTCAACAGCTTTGAGGACATCAACGAGGACAGCCTCAGTC
TCTTCCCCACCCTGGAGCCAAAGATCGACGTGCTTATCATTGGCATTGGC
GACCAAGCACCGCCCCCAGCTCTTTCCAAGAGGATCATCGAGTTCATGAA
GAAGTACAAGATAAACGTAGAGATCCTGCGCACGGAGCAGGCATGTGCCA
CCTTCAACTTCCTGAATGCCGAGAACCGAATGGTGGCCTGCGCCCTGATA
CCCCCGCTGCACCTGTCCTACAACGAGAACGACATTCTGCAAGCGAAGCT
GCGGAAGATAAGAGAGTATTAT
FMO04560.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:16:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5569-RA | 774 | CG5569-RA | 109..677 | 40..608 | 2845 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:16:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 23865522..23865773 | 40..291 | 1260 | 100 | Plus |
2R | 25286936 | 2R | 23866184..23866386 | 289..491 | 1015 | 100 | Plus |
2R | 25286936 | 2R | 23866436..23866557 | 487..608 | 610 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:16:37 has no hits.
FMO04560.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:30:17 Download gff for
FMO04560.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5569-RA | 105..682 | 34..614 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-04 10:59:34 Download gff for
FMO04560.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5569-RA | 98..675 | 34..614 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:57:21 Download gff for
FMO04560.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5569-RA | 105..682 | 34..614 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:57:21 Download gff for
FMO04560.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 23865518..23865773 | 34..291 | 98 | -> | Plus |
2R | 23866187..23866385 | 292..490 | 100 | -> | Plus |
2R | 23866440..23866562 | 491..614 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:30:17 Download gff for
FMO04560.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 19753041..19753296 | 34..291 | 98 | -> | Plus |
arm_2R | 19753710..19753908 | 292..490 | 100 | -> | Plus |
arm_2R | 19753963..19754085 | 491..614 | 98 | | Plus |