FMO04561.5prime Sequence
936 bp (936 high quality bases) assembled on 2008-08-04
> FMO04561.5prime
TTCGTATAGCATACATTATACGAAGTTATCAGTCGACATGGCCACTGAGG
TGTCGCAACTTTTGCTGGCGGTGGTCCAGGGCATCCCAGCCGGTGCCACC
AACGATGACCTGACCAAGGCGCTGCCCGATGTGCCGGCGGCCACGCGGGT
GGAAGCTTTGAATATACTGCTGCAGGAGGGCGGGATCGAGATCCTGAAGA
AGGGTGAAAAGCTGGTGTACCGTGCCAAGGACCCGGAAAAGAAGAGTGCC
CTGCCCAAGGATGCGGACAATGAGGAGAAGGTCGTCTACGGCATTGTTGA
GGAGGGCGGCAACAAAGGCATCTGGATTAGGGATATACGTATGAAGTCCA
ACCTGAACATGATACAGCTCAACAAGATCCTCAAGAACCTAGAAACCAAG
AAGCTCATCAAGGCGGTCAAGTCGGTGAACGCCAGCAAAAAGAAAGTGTA
CATGCTGTACAACCTAGAGCCGGATCTCTCCATTACGGGAGGAGCCTGGT
ACCAGGATCAGGACTTTGAGGTGGAGTTTGTGGATGTGCTCAACCAGCAG
TGCCTGCGCTTTCTGCAAATGAAACGCGACAGTGCGGAAAAGAAGCGCGA
GGGGCCACTGGCCTTCAAGCAGATGTCTTGCTGCACGGTGAACGAGGTTC
AGAAGTTCATCTCGGACCTGGGCATCAGTAAGGTTAATCTAGCGGAGGCC
GATCTGGAAACAATTCTCAAAACAGTGGTGTACGACGGCAATGCGGAACG
AGTGCGCCCAGCAGGATGGATCCTTCGTCTACCGGGCGGTGAACGCCCCA
CTTCCTCCGACTGGTCTGGTCCAGATGCCATGTGGCATTTGTCCCGTCAT
CAAAAACTGCTCCAATTGTGGCGATGTAACTGCTATAACTTGTGAATATA
TGCGAGATTGGGTTGGATGCAAGCTTTCTAGACAAT
FMO04561.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:17:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5380-RB | 1102 | CG5380-RB | 86..964 | 38..918 | 4295 | 99.3 | Plus |
| CG5380-RA | 1022 | CG5380-RA | 6..884 | 38..918 | 4295 | 99.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:17:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 22366224..22366703 | 911..431 | 2295 | 99 | Minus |
| 3R | 32079331 | 3R | 22366761..22367154 | 431..38 | 1970 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:17:57 has no hits.
FMO04561.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:57:52 Download gff for
FMO04561.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5380-RA | 1..884 | 35..918 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-04 11:01:14 Download gff for
FMO04561.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5380-RA | 1..884 | 35..918 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:55:15 Download gff for
FMO04561.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5380-RA | 1..884 | 35..918 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:55:15 Download gff for
FMO04561.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 22366218..22366703 | 431..918 | 98 | <- | Minus |
| 3R | 22366762..22367160 | 31..430 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:57:52 Download gff for
FMO04561.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 18191940..18192425 | 431..918 | 98 | <- | Minus |
| arm_3R | 18192484..18192882 | 31..430 | 99 | | Minus |
