FMO04563.5prime Sequence
538 bp (538 high quality bases) assembled on 2008-08-04
> FMO04563.5prime
TGTCTTCGCTATGGGTTCGGCCTGGGGGGGATTGGGGCTGGGTTCGTATA
GCATACATTATACGAAGTTATCAGTCGACATGAAACCCATTGGGTGCAAC
AATATTCCGGTCATCTTCCTGGTGATCCTCGGCATGGTCAGCCTGGCCAA
TTCGCTGCCCATGAATCCCGAACAGGAGCTAAAAGATGTCGACGAGCCAT
TGGGTCAGCAACGTCAGCATAAACAGCAGCATGTGCAGCAGATGCAGCGC
ATGGTGAAGAGCGAAGCGGTGCCAGAGTCGGAGCTCGTCGGAAAAATTGC
GCCACGCAATGAGCAGAATCCGGAGGATGAATACGATGCCGTCACATTGG
TGGAGGAGCTAGAGGCCGCCGGAGTTAAGCTGGCCGATCGACGTGATCTG
CGCAAGCTAACCTACACGGAGCTGGCCCGCCTGCTAGCCCTATGGCATCT
GTCCCAGAATCGCAATGTTTACAATGCCAAAGGACCGGAGGAGCAGCCCA
ATCAGGCCATCGATGAGCGTGCAAGCTTTCTAGACCAT
FMO04563.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:09:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15209-RA | 791 | CG15209-RA | 40..482 | 78..520 | 2200 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:09:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 10842244..10842686 | 78..520 | 2200 | 99.8 | Plus |
Blast to na_te.dros performed 2014-11-28 19:09:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2349..2391 | 206..248 | 116 | 74.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6854..6889 | 206..241 | 108 | 77.8 | Plus |
| gtwin | 7411 | gtwin GTWIN 7411bp | 2392..2423 | 160..191 | 106 | 81.2 | Plus |
FMO04563.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:24:37 Download gff for
FMO04563.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15209-RA | 86..538 | 74..529 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-04 11:02:55 Download gff for
FMO04563.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15209-RA | 86..538 | 74..529 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:41:39 Download gff for
FMO04563.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15209-RA | 36..488 | 74..529 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:41:39 Download gff for
FMO04563.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 10842240..10842692 | 74..529 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:24:37 Download gff for
FMO04563.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 10736273..10736725 | 74..529 | 98 | | Plus |
