FMO04564.5prime Sequence
519 bp (233 high quality bases) assembled on 2008-08-04
> FMO04564.5prime
CGTATAGCATACATTATACGAAGTTATCAATCGACATGCCTGGAGTCACA
GTAAAGGAAATCTATCACCACGTTCTGACCAAAAACATGGCTGCTTATCT
CAAAAAATCCGGAAAAATTTTTGTGCCCGAACAGGCCGTCTATATGAAGA
CTGGCAAGTTCAAGGAGACTGCTCCTACCGACGACGACTGGTTCTACACT
CGCTGCGCCTCTATTATGAGACACCTGTACCTGCGCAGTCCCGCCGGCGT
TGGGGCCTTCACCAAGGTCTATAGCGGGCGCTAGCGCAACGATGTTCCTC
ATTCCAAGCACTGTCGCTCATCGGATGGTCGAATTCGCAAGGCTCTTCAA
TCCTTGGAAGCTGCAAACATGGTGGAGAGGCACCCGGATGGTGGTCGTAA
GCTGACTCCGCAAGGACAACGTAACTTGGATTGCATAGCCAACAAGATTG
TGGCCAAGCGCCGAGAGCGCAGTGCACCAAAGTTCCTTGATTATCACAAC
CGCAGGCTTTCTAAACCAT
FMO04564.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:37:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| RpS19b-RC | 659 | CG5338-RC | 61..527 | 34..501 | 2015 | 95.5 | Plus |
| RpS19b-RB | 666 | CG5338-RB | 68..534 | 34..501 | 2015 | 95.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:37:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 23933089..23933397 | 342..34 | 1380 | 96.4 | Minus |
| 3R | 32079331 | 3R | 23932882..23933021 | 479..340 | 625 | 96.4 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:37:26 has no hits.
FMO04564.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:35:15 Download gff for
FMO04564.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpS19b-RB | 68..534 | 34..501 | 95 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-04 11:01:15 Download gff for
FMO04564.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpS19b-RB | 68..534 | 34..501 | 95 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:21:50 Download gff for
FMO04564.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpS19b-RB | 68..534 | 34..501 | 95 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:21:50 Download gff for
FMO04564.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 23932861..23933019 | 342..501 | 93 | -> | Minus |
| 3R | 23933090..23933395 | 36..341 | 96 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:35:15 Download gff for
FMO04564.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 19758583..19758741 | 342..501 | 93 | -> | Minus |
| arm_3R | 19758812..19759117 | 36..341 | 96 | -> | Minus |
