FMO04565.5prime Sequence
560 bp (560 high quality bases) assembled on 2008-08-04
> FMO04565.5prime
ATACGAAGTTATCAGTCGACATGTCGAAATCCGGAGAGTTTACATTCCGG
CGTGCTCTAGCTGAAGATATTAAAGATGTGCTCTCCATGATTCAAGAACT
GGCTGACTTTGAGAAGATGAGCAATGGTCCCCAGCTAACAGAGGAAGATC
TTAAACGAGACGCAGGACTCACTGGTGGCCAGGAGTATTGTGAAGTCTAT
GTGCTTGTAGACAACGATACTGATCAGGCGATTGGGTACTCCATTTGCTA
CAAGGCATACTCAACGTGGCAGGGACGGTACTTCTTCGTCGAGGACATCT
ATGTCCGCCCCGAGCACCGTAAACGCGGCGCCGGAAAGCGAATCTTCTTG
GAGGTTGCATCGCGGGCTGTAGAGCTTCAGTGCCCTCGCCTGGAGTTTAA
TGTACTGGAATGGAATCCTGCACGCAAGTTCTACGAAAGTCTTGGTGCCG
TGGATTTGACAGATAAAGAGGGCTGGCACTACTACCGCGTGGAGGAGCAA
CAACTGGCCAAATTGGCCGCGGATCTGAGGGCAAAAAAATCTGCAAGCTT
TCTAGACCAT
FMO04565.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:31:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4210-RA | 682 | CG4210-RA | 60..581 | 21..542 | 2610 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:31:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 15214426..15214744 | 224..542 | 1595 | 100 | Plus |
| 3R | 32079331 | 3R | 15214288..15214365 | 146..223 | 390 | 100 | Plus |
| 3R | 32079331 | 3R | 15214033..15214108 | 21..96 | 380 | 100 | Plus |
| 3R | 32079331 | 3R | 15214170..15214221 | 96..147 | 260 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 21:31:19 has no hits.
FMO04565.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:35:41 Download gff for
FMO04565.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4210-RA | 60..587 | 21..550 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-04 10:59:45 Download gff for
FMO04565.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4210-RA | 60..587 | 21..550 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:25:12 Download gff for
FMO04565.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4210-RA | 60..587 | 21..550 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:25:12 Download gff for
FMO04565.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 15214033..15214107 | 21..95 | 100 | -> | Plus |
| 3R | 15214170..15214221 | 96..147 | 100 | -> | Plus |
| 3R | 15214290..15214365 | 148..223 | 100 | -> | Plus |
| 3R | 15214426..15214750 | 224..550 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:35:41 Download gff for
FMO04565.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 11039755..11039829 | 21..95 | 100 | -> | Plus |
| arm_3R | 11039892..11039943 | 96..147 | 100 | -> | Plus |
| arm_3R | 11040012..11040087 | 148..223 | 100 | -> | Plus |
| arm_3R | 11040148..11040472 | 224..550 | 99 | | Plus |
