FMO04566.5prime Sequence
660 bp (660 high quality bases) assembled on 2008-08-04
> FMO04566.5prime
ATACATTATACGGAAGTTATCAGTCGACATGGAAATTTGGCGCTCGCTCA
CAGTGGGCACCATCGTGCTATTGGCCATCGTCTGCTTCTACGGCACCGTG
GAGTCCTGCAACGAGGTCGTCTGCGCCTCGATCGTCTCCAAGTGCATGCT
CACCCAGAGCTGCAAGTGCGAGCTGAAGAACTGCTCCTGCTGCAAGGAGT
GCCTCAAATGCCTGGGCAAGAACTACGAGGAGTGCTGCAGCTGTGTGGAA
CTCTGTCCGAAGCCCAACGACACCCGCAACTCGCTGTCCAAGAAGTCCCA
CGTGGAGGATTTCGATGGAGTGCCGGAGCTCTTCAACGCCGTGGCCACTC
CGGATGAGGGCGACAGCTTCGGATACAACTGGAACGTGTTCACGTTTCAA
GTGGATTTCGACAAGTACTTGAAGGGACCCAAGCTGGAGAAGGACGGTCA
ATACTTCTTGAGAACCAATGATAAGAACCTGGACGAAGCGATTCAGGAGC
GTGACAACATTGTGACCGTAAACTGCACGGTTATATATCTGGATCAGTGC
GTGTCGTGGAACAAGTGCCGCACCAGCTGCCAGACGACAGGCGCCAGCAG
TACGAGATGGTTCCACGACGGCTGCTGCGAATGTGTGGGGATCCACGTGC
ATCAACTACG
FMO04566.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:16:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| cv-RC | 1742 | CG12410-RC | 767..1398 | 28..660 | 3125 | 99.7 | Plus |
| cv-RB | 1308 | CG12410-RB | 333..964 | 28..660 | 3125 | 99.7 | Plus |
| cv-RA | 1893 | CG12410-RA | 607..1238 | 28..660 | 3125 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:16:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 5690768..5690988 | 28..248 | 1105 | 100 | Plus |
| X | 23542271 | X | 5691891..5692105 | 248..462 | 1060 | 99.5 | Plus |
| X | 23542271 | X | 5692165..5692309 | 462..606 | 725 | 100 | Plus |
| X | 23542271 | X | 5692375..5692429 | 605..660 | 230 | 98.2 | Plus |
| X | 23542271 | X | 11988727..11988837 | 217..107 | 210 | 79.3 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:16:42 has no hits.
FMO04566.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:30:19 Download gff for
FMO04566.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cv-RA | 603..1238 | 25..660 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-04 10:59:46 Download gff for
FMO04566.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cv-RA | 609..1244 | 25..660 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:57:23 Download gff for
FMO04566.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cv-RA | 603..1238 | 25..660 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:57:23 Download gff for
FMO04566.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 5690764..5690988 | 25..248 | 99 | -> | Plus |
| X | 5691892..5692104 | 249..461 | 99 | -> | Plus |
| X | 5692165..5692309 | 462..606 | 100 | -> | Plus |
| X | 5692377..5692429 | 607..660 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:30:19 Download gff for
FMO04566.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 5584797..5585021 | 25..248 | 99 | -> | Plus |
| arm_X | 5585925..5586137 | 249..461 | 99 | -> | Plus |
| arm_X | 5586198..5586342 | 462..606 | 100 | -> | Plus |
| arm_X | 5586410..5586462 | 607..660 | 98 | | Plus |
