FMO04567.5prime Sequence
377 bp (377 high quality bases) assembled on 2008-08-04
> FMO04567.5prime
GCATACATTATACGAAGTTATCAGTCGACATGGCCGAAGAACCCGAGGAA
CCCGCCAAGAGCTTCGTTATCTTCGGACGCGATGTGGCGCAGATCCCGTG
CTTTCGTAACAGTTTTCTCTACGGAATCAGCGGAGGGATCGGCATCGGCT
TGCTGACTTTTCTGGGCACCTCGCGAACCCACCTGTCCACCCACGTGGGC
TTCGGCTCCTTCTTCTGCGGCACCATCGCCTACTGGATGACCTGCAGGTA
TCAATGGTCCGTCAGGAGATTCGAGCAGCAGCAATTGCGTGAGGCGATGA
GACGACAAGCCCTTTATGAGGGCACCCAAAGGGAGAGAGACTTAGATCTG
AAGTCGGCGGCAAGCTTTCTAGACCAT
FMO04567.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:18:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| l(3)87Df-RA | 551 | CG7620-RA | 69..399 | 29..359 | 1640 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:18:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 13031080..13031272 | 58..250 | 950 | 99.5 | Plus |
| 3R | 32079331 | 3R | 13031331..13031446 | 244..359 | 580 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:18:01 has no hits.
FMO04567.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:57:56 Download gff for
FMO04567.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| l(3)87Df-RA | 69..403 | 29..365 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-04 11:01:17 Download gff for
FMO04567.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| l(3)87Df-RA | 40..374 | 29..365 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:55:16 Download gff for
FMO04567.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| l(3)87Df-RA | 69..403 | 29..365 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:55:16 Download gff for
FMO04567.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 13030981..13031011 | 29..59 | 100 | -> | Plus |
| 3R | 13031082..13031269 | 60..247 | 99 | -> | Plus |
| 3R | 13031335..13031450 | 248..365 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:57:56 Download gff for
FMO04567.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 8856703..8856733 | 29..59 | 100 | -> | Plus |
| arm_3R | 8856804..8856991 | 60..247 | 99 | -> | Plus |
| arm_3R | 8857057..8857172 | 248..365 | 97 | | Plus |
