Clone FMO04569 Report

Search the DGRC for FMO04569

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:45
Well:69
Vector:pMK33-CFH-BD
Associated Gene/TranscriptCG31221-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO04569.5prime Sequence

720 bp (720 high quality bases) assembled on 2008-08-04

> FMO04569.5prime
AACTTCGTATAGCATACATTATACGAAGTTATCAGTCGACATGTCCTTCC
TGGCAATGGACCACCACCATCATCATCATCATCAGCAGCCGCGTCAGCAC
CACCTCAGCATGTGGCCATCATTCGCCGTCTGTCTGCTCCTCCTGCAGAC
CACCACGACCACCATGGCCATCGATTTGAGTCGTTTGTACGGGCACATGG
CCAATCCCATCGTGAAGCGGAGCGAAGCCTGTCATCCGTATGAGCCCTTC
AAGTGTCCCGGGGATGGTAATTGCATTTCCATCCAATATTTATGCGATGG
TGCACCCGATTGCTCTGACGGATACGATGAGGATATGCGTCTATGTACGG
CTGCCAAGCGGCCGCCGGTCGAGGAGACCGCATCCTTCCTCCAGAGCCTG
ATCGCCTCCCACGGACCCAATTACCTGGAAAAACTTTTCGGCAGCAAGGC
ACGTGATGCCCTTTCACCTCTCGGCGGAGTCGAGAAGGTCGCCATCGCGT
TGAGTGAGTCGCAAACGATTGAGGATTTTGGAGCTGCCCTTCATCTAATG
AGATCGGACCTGGAACACTTGCGCTCGGTTTTCATGGCGGTGGAGAACGG
GGATCTGGGCATGCTGAAAGTCGCTGGGCATCAAGGACTCGGAGCTGGGC
GATGTGAAGTTCTTCTTGGAGAAGCTGGTCAACACCGGCTTCCTCGACGC
AAGCTTTCTAGACCATTCGT

FMO04569.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:26:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG31221-RC 4352 CG31221-RC 649..1305 41..698 3265 99.8 Plus
CG31221-RB 1633 CG31221-RB 644..1300 41..698 3265 99.8 Plus
CG31221-RA 4352 CG31221-RA 649..1305 41..698 3265 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:26:01
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 19454066..19454265 353..552 1000 100 Plus
3R 32079331 3R 19416205..19416388 41..224 920 100 Plus
3R 32079331 3R 19457118..19457264 551..698 690 99.3 Plus
3R 32079331 3R 19440702..19440831 224..353 650 100 Plus
Blast to na_te.dros performed on 2014-11-28 23:26:02 has no hits.

FMO04569.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:23:18 Download gff for FMO04569.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31221-RA 645..1305 35..698 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2010-07-30 09:29:32 Download gff for FMO04569.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31221-RA 640..1300 35..698 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:11:46 Download gff for FMO04569.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31221-RA 645..1305 35..698 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:11:46 Download gff for FMO04569.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 19416199..19416388 40..224 97 -> Plus
3R 19440703..19440831 225..353 100 -> Plus
3R 19454067..19454265 354..552 100 -> Plus
3R 19457120..19457264 553..698 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:23:18 Download gff for FMO04569.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 15241921..15242110 40..224 97 -> Plus
arm_3R 15266425..15266553 225..353 100 -> Plus
arm_3R 15279789..15279987 354..552 100 -> Plus
arm_3R 15282842..15282986 553..698 99   Plus