FMO04570.5prime Sequence
559 bp (559 high quality bases) assembled on 2008-08-04
> FMO04570.5prime
TTCGTATAGCATACATTATACGAAGTTATCAGTCGACATGTCCGAACTGC
AAGCATCGCTACTGCTCAATCGCCAGCTCTCCGAATTACAACGCCATCCC
GTCGAGGGCTTCTCCGCCGGTCTGGTCAGCGACTCCGACATCTTCAAATG
GGAGGTGGTGATCATCGGTCCCCCAGATACGCTATACGAGGGCGGCTTCT
TCAAGGCTCACCTGATCTTCCCCAAAGAGTACCCACTGCGCCCGCCCAAG
ATGAAGTTCATCACCGAAATCTGGCATCCCAATATTGACAAGGCCGGCGA
CGTTTGCATCTCGATCCTCCACGAACCTGGTGACGATAAGTGGGGCTACG
AGAAGGCCGAGGAGCGCTGGCTACCGGTCCACACCGTGGAGACGATCCTT
CTTTCCGTTATCTCCATGCTCACCGATCCCAATGACGAGTCGGCCGCCAA
TGTGGATGCGGCCAAGGAGTACCGGGAGAATTATGCGGAATTCAAGCGCA
AGGTCACCAGGTGCGTCCGCCGTAGTCAGGAGGAGGTGGAAGCAAGCTTT
CTAGACCAT
FMO04570.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:13:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ubc87F-RA | 660 | CG9602-RA | 72..578 | 35..541 | 2535 | 100 | Plus |
| CG40045-RB | 868 | CG40045-RB | 427..722 | 173..468 | 310 | 74.1 | Plus |
| CG40045-RA | 740 | CG40045-RA | 299..594 | 173..468 | 310 | 74.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:13:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 13717536..13718042 | 541..35 | 2535 | 100 | Minus |
| 3L | 28110227 | 3L | 24035432..24035713 | 187..468 | 270 | 73 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:13:29 has no hits.
FMO04570.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:55:27 Download gff for
FMO04570.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9602-RA | 58..578 | 23..541 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-04 10:58:10 Download gff for
FMO04570.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9602-RA | 48..568 | 23..541 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:53:05 Download gff for
FMO04570.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ubc87F-RA | 58..578 | 23..541 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:53:05 Download gff for
FMO04570.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 13717536..13718043 | 33..541 | 99 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:55:27 Download gff for
FMO04570.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 9543258..9543765 | 33..541 | 99 | <- | Minus |
