FMO04571.5prime Sequence
556 bp (556 high quality bases) assembled on 2008-08-04
> FMO04571.5prime
TTCGTATAGCATACATTATACGAAGTTATCAGTCGACATGGTAGCTGGTG
GTGCCTCGGAAACGGGCGGCGTGAAGCCGATGGTAATTGCGGGCCGCATG
GTGCGGGAGCGGGAGCGCCTGATCGGCATGTCGCCGGAGGAGCGCGCCTG
GCGCAAACAGTGGCTGAAGGACCAGGAGCTGCACCATGGACCCCGCAAGG
TGCCCGCCCTGGAGCTGGAGCTGAACAACCCCATCAAGCGCTTCTACCGC
GCTCCCCTCGACAAGGTCTGCAATGTTTTGGAACCCGTCCTGGGCTTTCA
GCGCGCGTACACCGTGCGCTTCTGGACCGGAAAGGCTCTGCTCGCCCTAA
CCGGAATCTACGCCGGCGCCTACTACTTCAAGTACAATCAGAATGACTGG
ACCCGGAAGGGCGGCTGGCGTGTGATCCACTCGCGCAAGCAGTGCGTGCC
CGGAGATGAGGGCTATCCCAAGGTCTCCGATCGATCGGCGCCTTCCGATT
ACGCGGCTCGCGGATTCAACGAGTCGCCGCTGAAAGCTGCAAGCTTTCTA
GACCAT
FMO04571.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:06:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| l(2)35Di-RC | 992 | CG13240-RC | 103..603 | 38..538 | 2460 | 99.4 | Plus |
| l(2)35Di-RA | 710 | CG13240-RA | 103..603 | 38..538 | 2460 | 99.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:06:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 15750721..15750976 | 293..38 | 1265 | 99.6 | Minus |
| 2L | 23513712 | 2L | 15749708..15749851 | 538..395 | 705 | 99.3 | Minus |
| 2L | 23513712 | 2L | 15750549..15750652 | 395..292 | 505 | 99 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:06:19 has no hits.
FMO04571.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:39:07 Download gff for
FMO04571.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| l(2)35Di-RA | 103..608 | 38..543 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-04 10:58:12 Download gff for
FMO04571.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| l(2)35Di-RA | 79..584 | 38..543 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:59:08 Download gff for
FMO04571.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| l(2)35Di-RA | 103..608 | 38..543 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:59:08 Download gff for
FMO04571.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 15749709..15749851 | 395..537 | 99 | <- | Minus |
| 2L | 15750550..15750651 | 293..394 | 99 | <- | Minus |
| 2L | 15750722..15750977 | 38..292 | 99 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:39:07 Download gff for
FMO04571.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 15749709..15749851 | 395..537 | 99 | <- | Minus |
| arm_2L | 15750550..15750651 | 293..394 | 99 | <- | Minus |
| arm_2L | 15750722..15750977 | 38..292 | 99 | <- | Minus |
