FMO04573.5prime Sequence
1231 bp (1022 high quality bases) assembled on 2008-08-04
> FMO04573.5prime
GCATACATTATACGAAGTTATCAGTCGACATGCCAGCACCAGAGGACCTA
AACTCCTCCGACCAAGAGGAATATTTCTGCACCGAAAAGGACGCCGCTGC
CGATGGAAGTCATCTGTTGCATGCCCCTGGAACGGTGGATGGAGCAACTG
CATCCACCTCGGCTCCGGGACTGGGCGGCAACCACATGACCAGCAGCTGG
TGGTGGCGCACTCGCAGCTTGAATGCACCCTCGCCTGTCCAGCAGTTCGG
ACCATGTGGTCGCATCATGAAAAACTCCGCCATGGTGATGCAGATCCAGG
ATCCGGCTAGTCAACGTCTCACCTGGTACAAGCCACCACTCACCGTGCTC
GTGATCAAGAAGGTCAGCGATGCCTCGGTGCTGGCACCGTTCGTCTACCT
GGTGGACTGGCTGCTGCAGGAGAAGAACATGGTCGTTTGGGTGGAGTCGG
CCGTGCTGGAGGATGTCCAGCTCAACGAAAATGTGCGATTCAAGGCCATT
CGGGATAAGCTAGTGACTTTCAAAGATGGCCGAGATGATCTGACCGATCG
CATAGACTTTATAGTTTGCCTGGGTGGCGATGGCACCCTGCTGTATGCTT
CGCTGCTCTTCCAGCAATCTGTGCCCCCCGTCATGGCCTTCCATTTGGGC
TCCCTCGGCTTTCTCACACCCTTCCGTTTCGATAACTTTGAGGAGCAGCT
GACCAGCGTCCTGGAGGGTCACGCTGCCCTAACGCTTCGCAGTCGTTTGC
GCTGTGTTATGCATCGCAGGAGCGATAGGAAACACGAGGCTAAGACTCTG
GAGGCAGATCTAGATGGTGAGGCGCGACCTGCAGCCAACAGCATACTGGT
GCTCAACGAAGTGGTCATTGATCGTGGTCCATCGCCGTATCTGAGAATAT
TGATCTGTTTCTGGACGGAAAGTATATCACGTCCGTGCAGGGCGACGGTC
TGATCGTATTCGACCCTCACGGGAAGCACGGCATATGCGGCGGCGGCCGG
TGCAGTCCATGATTCATCCCTCCGTGCCGCGAATTATGGGTAACTTCCCA
TCTTGCCCGCATTCGCTTAGCTTCCGAACCATTGTGGTGGCAGCAGGAAT
TGGAGCCTGAAAGAATTCAGTATCCCCCGAGAGGCCAACCATTCTGTGGT
TAGCTTTCAATGAGCACAGCAGAGACTCTCTCAGGGGACAGGCCTTCCGG
TTACACCTCTCATTTATTATCCGGGTGCCAC
FMO04573.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:07:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG33156-RA | 1874 | CG33156-RA | 147..1267 | 30..1156 | 5110 | 97.6 | Plus |
| CG33156-RF | 1795 | CG33156-RF | 243..1188 | 205..1156 | 4235 | 97.2 | Plus |
| CG33156-RB | 1824 | CG33156-RB | 272..1217 | 205..1156 | 4235 | 97.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:07:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 13548966..13549536 | 1098..524 | 2435 | 96.9 | Minus |
| 2R | 25286936 | 2R | 13549599..13549917 | 523..205 | 1595 | 100 | Minus |
| 2R | 25286936 | 2R | 13552107..13552283 | 206..30 | 885 | 100 | Minus |
| 2R | 25286936 | 2R | 13538625..13538855 | 754..524 | 585 | 83.5 | Minus |
| 2R | 25286936 | 2R | 13539104..13539350 | 454..205 | 585 | 83.2 | Minus |
| 2R | 25286936 | 2R | 13538276..13538468 | 1029..836 | 345 | 82.1 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:07:14 has no hits.
FMO04573.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:44:32 Download gff for
FMO04573.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33156-RA | 137..1259 | 19..1149 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-04 10:58:15 Download gff for
FMO04573.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33156-RA | 114..1236 | 19..1149 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:59:32 Download gff for
FMO04573.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33156-RA | 137..1259 | 19..1149 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:59:32 Download gff for
FMO04573.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 13548950..13549536 | 524..1114 | 96 | <- | Minus |
| 2R | 13549599..13549916 | 206..523 | 100 | <- | Minus |
| 2R | 13552108..13552293 | 19..205 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:44:32 Download gff for
FMO04573.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 9436455..9437041 | 524..1114 | 96 | <- | Minus |
| arm_2R | 9437104..9437421 | 206..523 | 100 | <- | Minus |
| arm_2R | 9439613..9439798 | 19..205 | 97 | | Minus |
