FMO04574.5prime Sequence
698 bp (698 high quality bases) assembled on 2008-08-04
> FMO04574.5prime
CTTCGTATAGCATACATTATACGAAGTTATCAGTCGACATGATTGAGTCG
GAGAAGTTGAGTGGGATATATGTGATACCCAGCTATGCTAACTCCTTGCA
GTGGTTTGGAGTCTTCTTTGGCCGACAGGGCTTGTATGCGGAAAGTGTTT
TTCGATTCACAATTTTGCTCCCAGATCGTTTTCCCGACGACAAAAGTCTT
CCGAGCATAATTTTCCAGCAGGATGTGATTCATCCCCATGTGTGCCCGTA
CACCCACAGTTTGGACGTGAGCCACGCCTTCCCGGAGTGGCGCTGTGGAG
AGGATCACCTTTGGCAGCTTTTAAAGTACCTGCAAGTCATTTTCTCCGAT
CCCTTGGACAGTATTCGGGGCATTGAGGTAGATAAGCTCAAAAACAGCGA
GGCTGCGGAGCTGCTGATGAATAACAAGGAGGAGTATGTTGCTCGCGTAC
AGGAAAATATCAAGGAGAGCAAGGAGCATATATTTGACACCCCACCCACC
GAAGATCCGCACTACATAGTATTCGAGAAGTTCCAGCAGGACGTGCACGG
GCCCGTTCTGGAGCGCATCAAGGCCGGAAGAAGCAAGCTGACGGAGCCTT
CAGCGCAACAAGCAAATGGTGGACATGCAACTGGTCTGTCATGGGTTAAG
GAGGGCGAGTTTAAGCCACTTAGCATTGAGGCAAGCTTTCTAGACCAT
FMO04574.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:12:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| cbx-RB | 908 | CG10536-RB | 184..825 | 39..680 | 3210 | 100 | Plus |
| cbx-RA | 1036 | CG10536-RA | 312..953 | 39..680 | 3210 | 100 | Plus |
| cbx-RC | 766 | CG10536-RC | 135..456 | 39..378 | 1420 | 94.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:12:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 9864593..9865070 | 680..203 | 2390 | 100 | Minus |
| 2R | 25286936 | 2R | 9865124..9865227 | 203..100 | 520 | 100 | Minus |
| 2R | 25286936 | 2R | 9865290..9865350 | 99..39 | 305 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:12:53 has no hits.
FMO04574.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:36:10 Download gff for
FMO04574.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cbx-RA | 312..956 | 39..684 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-04 11:01:18 Download gff for
FMO04574.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cbx-RB | 165..809 | 39..684 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:51:12 Download gff for
FMO04574.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cbx-RA | 312..956 | 39..684 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:51:12 Download gff for
FMO04574.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 9864589..9865069 | 204..684 | 99 | <- | Minus |
| 2R | 9865124..9865227 | 100..203 | 100 | <- | Minus |
| 2R | 9865290..9865361 | 26..99 | 93 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:36:10 Download gff for
FMO04574.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 5752795..5752866 | 26..99 | 93 | | Minus |
| arm_2R | 5752094..5752574 | 204..684 | 99 | <- | Minus |
| arm_2R | 5752629..5752732 | 100..203 | 100 | <- | Minus |
